YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	U73B2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDHHHRKL HVMFFPFMAY GHMIPTLDMA KLFSSRGAKS TILTTSLNSK ILQKPIDTFK  60
   61 NLNPGLEIDI QIFNFPCVEL GLPEGCENVD FFTSNNNDDK NEMIVKFFFS TRFFKDQLEK 120
  121 LLGTTRPDCL IADMFFPWAT EAAGKFNVPR LVFHGTGYFS LCAGYCIGVH KPQKRVASSS 180
  181 EPFVIPELPG NIVITEEQII DGDGESDMGK FMTEVRESEV KSSGVVLNSF YELEHDYADF 240
  241 YKSCVQKRAW HIGPLSVYNR GFEEKAERGK KANIDEAECL KWLDSKKPNS VIYVSFGSVA 300
  301 FFKNEQLFEI AAGLEASGTS FIWVVRKTKD DREEWLPEGF EERVKGKGMI IRGWAPQVLI 360
  361 LDHQATGGFV THCGWNSLLE GVAAGLPMVT WPVGAEQFYN EKLVTQVLRT GVSVGASKHM 420
  421 KVMMGDFISR EKVDKAVREV LAGEAAEERR RRAKKLAAMA KAAVEEGGSS FNDLNSFMEE 480
  481 FSS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.52
Transmembrane Helix	10	26	0.51
Non-Cytoplasmic	27	483	0.96