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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|23297040, gi|...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSPAAPAP TTTTGGDSRR RLSASIEAIC KRRFRRNSKG GGRSDMVKPF NIINFSTQDK  60
   61 NSSCCCFTKF QIVKLLLFIL LSATLFTIIY SPEAYHHSLS HSSSRRQDPR YFSDLDINWD 120
  121 DVTKTLENIE EGRTIGVLNF DSNEIQRWRE VSKSKDNGDE EKVVVLNLDY ADKNVTWDAL 180
  181 YPEWIDEEQE TEVPVCPNIP NIKVPTRRLD LIVVKLPCRK EGNWSRDVGR LHLQLAAATV 240
  241 AASAKGFFRG HVFFVSRCFP IPNLFRCKDL VSRRGDVWLY KPNLDTLRDK LQLPVGSCEL 300
  301 SLPLGIQDRP SLGNPKREAY ATILHSAHVY VCGAIAAAQS IRQSGSTRDL VILVDDNISG 360
  361 YHRSGLEAAG WQIRTIQRIR NPKAEKDAYN EWNYSKFRLW QLTDYDKIIF IDADLLILRN 420
  421 IDFLFSMPEI SATGNNGTLF NSGVMVIEPC NCTFQLLMEH INEIESYNGG DQGYLNEVFT 480
  481 WWHRIPKHMN FLKHFWIGDE DDAKRKKTEL FGAEPPVLYV LHYLGMKPWL CYRDYDCNFN 540
  541 SDIFVEFATD IAHRKWWMVH DAMPQELHQF CYLRSKQKAQ LEYDRRQAEA ANYADGHWKI 600
  601 RVKDPRFKIC IDKLCNWKSM LRHWGESNWT DYESFVPTPP AITVDRRSSL PGHNL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle