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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CASP_ARATH
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVSQDGSER DKTPPPSSSS SSSSPIPVVT NFWKEFDLEK EKSLLDEQGL RIAENQENSQ  60
   61 KNRRKLAEST RDFKKASPEN KLSMFNSLLK GYQEEVDNIT KRAKFGENAF LNIYQKLYEA 120
  121 PDPFPALASI AEQDRKLSEV ESENRKMKVE LEEFRTEATH LKNQQATIRR LEERNRQLEQ 180
  181 QMEEKIKEVV EIKQRNLAEE NQKTMELLKD REQALQDQLR QAKDSVSTMQ KLHELAQNQL 240
  241 FELRAQSDEE TAGKQSEVSL LMDEVERAQT RLLTLEREKG HLRSQLQTAN EDTDNKKSDN 300
  301 IDSNSMLENS LTAKEKIISE LNMEIHNVET ALANERESHV AEIKKLNSLL NKKDTIIEEM 360
  361 KKELQERPSA KLVDDLRKKV KILQAVGYNS IEAEDWDAAT TGEEMSKMES LLLDKNRKME 420
  421 HEVTQLKVQL SEKASLLEKA EAKGEELTAK VNEQQRLIQK LEDDILKGYG SKERKGALFD 480
  481 EWEFSEAGVA EQSEPMDQKH VPSEQDQSSM LKVICSQRDR FRARLRETEE EIRRLKEKIG 540
  541 FLTDELEKTK ADNVKLYGKI RYVQDYNHDK VVSRGSKKYV EDLESGFSSD VESKYKKIYE 600
  601 DDINPFAAFS KKEREQRIKD LGIRDRITLS SGRFLLGNKY ARTFAFFYTI GLHVLVFTCL 660
  661 YRMSAYSYLS HGAEETLMTE ATTNLPHGL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle