YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD2B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFRLAGDM THLASVLVLL LKIHTIKSCA GVSLKTQELY AIVFATRYLD IFTSFVSLYN  60
   61 TSMKLVFLGS SFSIVWYMKY HKAVHRTYDR EQDTFRHWFL VLPCFLLALL IHEKFTFLEV 120
  121 LWTSSLYLEA VAILPQLVLL QRTRNIDNLT GQYIFLLGGY RGLYILNWIY RYFTEPHFVH 180
  181 WITWIAGFVQ TLLYADFFYY YFLSWKNNKK LQLPA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.61
Transmembrane Helix	10	26	0.58
Non-Cytoplasmic	27	57	0.72
Transmembrane Helix	58	78	0.82
Cytoplasmic	79	93	0.92
Transmembrane Helix	94	112	0.92
Non-Cytoplasmic	113	119	0.73
Transmembrane Helix	120	140	0.84
Cytoplasmic	141	148	0.83
Transmembrane Helix	149	170	0.83
Non-Cytoplasmic	171	179	0.79
Transmembrane Helix	180	203	0.90
Cytoplasmic	204	215	0.94