YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATG10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAREVSDG RLTVEGFSVA SRAFADKWKI HNQSFPPWSW VPLINRTLLV SKKEEGYLSL  60
   61 EKIIILSSLE EEIPEDESLN VATDCLEKEE TVDHTILVPT MENEAHYYDF HIVYSASYKV 120
  121 PVLYFRGYCS GGEPLALDVI KKDVPSCSVS LLLESKWTFI TQEEHPYLNR PWFKLHPCGT 180
  181 EDWIKLLSQS SSSSGCQMPI VLYLVSWFSV VGQVVGLRIP LEMLN

Type	Start	End	Confidence
Non-Cytoplasmic	1	197	0.76
Transmembrane Helix	198	219	0.77
Cytoplasmic	220	225	0.55