YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30688366, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLLKAREK LLSPLVSSTI RRLSSSLSYS REDSRDSEVL IHPSAVVHPN AVIGKGVSVG  60
   61 PYCTIGSSVK LGNGCKLYPS SHVFGNTELG ESCVLMTGAV VGDELPGYTF IGCNNIIGHH 120
  121 AVVGVKCQDL KYKHGDECFL CIGNNNEIRE FCSIHRSSKP SDKTVIGDNN LIMGSCHIAH 180
  181 DCKIGDRNIF ANNTLLAGHV VVEDNTHTAG ASVVHQFCHI GSFAFIGGGS VVSQDVPKYM 240
  241 MVAGERAELR GLNLEGLRRN GFTMSEMKSL RAAYRKIFMS TETVSLSFEE RLTELDQELY 300
  301 SVPAVSAMLQ SIRDSFTESR RGICKFRQWL DSTT

Type	Start	End	Confidence
Signal Peptide	1	26	0.74
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	334	0.99