YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SAT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGDELPFES GFEVYAKGTH KSEFDSNLLD PRSDPIWDAI REEAKLEAEK EPILSSFLYA  60
   61 GILAHDCLEQ ALGFVLANRL QNPTLLATQL LDIFYGVMMH DKGIQSSIRH DLQAFKDRDP 120
  121 ACLSYSSAIL HLKGYHALQA YRVAHKLWNE GRKLLALALQ SRISEVFGID IHPAARIGEG 180
  181 ILLDHGTGVV IGETAVIGNG VSILHGVTLG GTGKETGDRH PKIGEGALLG ACVTILGNIS 240
  241 IGAGAMVAAG SLVLKDVPSH SVVAGNPAKL IRVMEEQDPS LAMKHDATKE FFRHVADGYK 300
  301 GAQSNGPSLS AGDTEKGHTN STS

Type	Start	End	Confidence
Cytoplasmic	1	226	0.52
Transmembrane Helix	227	249	0.60
Non-Cytoplasmic	250	323	0.74