YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50794489
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGIVVFRRR WSVGSDDLVL PAVFLFLLHT TWFVILSVVL FGLVYNPNET CSLNLVDHGR  60
   61 GYLGILLSCM IAEMAIIWLS MRGSILYTEP RDSMQYVLYV RLAILVIEFV YAIVGIIWLT 120
  121 QYYTSCNDIT AKSVTLGMVV CNWVVILSVC ITVLCVFDPT GRTFVKLRAT KRRQRNLRTY 180
  181 NLRHRLEEGQ ASSWTRRLKV FLCCTRTKDS QSDAYSEIAY LFAEFFRDLD IVPSDIIAGL 240
  241 VLLRQRQRAK RNAVLDEANN DILAFLSGMP VTRNTKYLDL KNAQEMQRYK EVCYYMLFAL 300
  301 AAYGWPIYLM RKPTCGLCHL ARSCSCCCLC PSRPRYAPSV TIEEDNCCGC NAIAIRRHFL 360
  361 DENMTSVDIV YTSCHDAVYE TPFYVAVDHE KKKVVISIRG TLSPKDALTD LTGDAERLPV 420
  421 EGHHGTWLGH KGMVLSAEYI KKKLEQEMVL SQAFGRDLGR GTKHYGLIVV GHSLGAGTAA 480
  481 ILSFLLRPQY PSLKCFAYSP PGGLLSEDAM EYSKEFVTAV VLGKDLVPRI GLSQLEGFRR 540
  541 QLLDVLQRSN KPKWRIIVGA TKCIPKSELP EETEENSVTS NRLWTHPSDL TIALSASTPL 600
  601 YPPGRIIHVV HNHPAEQCCC CEQEDPTYFA IWGDNKAFNE VIISPAMLHE HLPYVVMEGL 660
  661 NKVLENYNKG KTALLSAAKV MVSPTEVDLT PELIFQSQPL PSGPSVQIGT GALTVDRRNS 720
  721 STKIGLSQLE GFRRQLLDVL QRSNKPKWRI IVGATKCIPK SELPEETEEN SVTSNRLWTH 780
  781 PSDLTIALSA STPLYPPGRI IHVVHNHPAE QWCLVSMLWP GFLVLAARPA ANPPGQKDKH 840
  841 RRKPKGMQNP RGPGNGAQEE QAGFQHHRRS LARSPRNGDQ PVEMVDLVIS RFPHLVLVSG 900
  901 SQDEVPPLSP FLPPPGHDIN GALEPSNIDT SILEEYISKE DSPDICFPDI SASSGCAHPQ 960
  961 PSSSATVNAP LPSSVGSAGH VNNPASSGSL HLPPPGSQIP IRHGPLLANP CGPSYGAHLN1020
 1021 CNNNNGMAVP KGYLGGHCLN NMVPPIKSEP KASYAPGVAS KYGVVLPMLA VHQLQGIIGS1080
 1081 LSVQFSCVLQ LGPNLAIGDW SRGRVIQLAA VVVLSTLPDS PPDSGSEAYS PQQVTDPHLL1140
 1141 RTMTPENMCH AVPPPSHPHY PGLQRDLYMK AEPLMPPYGM GQGMAPADLH HAQQSQMLHQ1200
 1201 LLQQHGADLP VHPAKKRKHS ESPPNTLSAQ MLNGLIKQEP GMGSVPLNPD RVPTPPWHQP1260
 1261 GPLSPGLIQD NDSLNGSYLD PNYQSIKWQP HQQNKWATLY DANYKEL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle