YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46227895
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.51
Transmembrane Helix	5	22	0.53
Cytoplasmic	23	27	0.61
Transmembrane Helix	28	50	0.88
Non-Cytoplasmic	51	59	0.61
Transmembrane Helix	60	78	0.83
Cytoplasmic	79	87	0.55
Transmembrane Helix	88	107	0.87
Non-Cytoplasmic	108	116	0.51
Transmembrane Helix	117	134	0.95
Cytoplasmic	135	147	0.44
Transmembrane Helix	148	169	0.73
Non-Cytoplasmic	170	206	0.45
Transmembrane Helix	207	230	0.82
Cytoplasmic	231	245	0.76
Transmembrane Helix	246	266	0.74
Non-Cytoplasmic	267	288	0.90
Transmembrane Helix	289	308	0.96
Cytoplasmic	309	323	0.84
Transmembrane Helix	324	343	0.91
Non-Cytoplasmic	344	350	0.84
Transmembrane Helix	351	372	0.86
Cytoplasmic	373	400	0.90
Transmembrane Helix	401	421	0.65
Non-Cytoplasmic	422	430	0.65
Transmembrane Helix	431	456	0.85
Cytoplasmic	457	466	0.63
Transmembrane Helix	467	488	0.87
Non-Cytoplasmic	489	532	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNTFHLIDI ILFSSLVLTL NFNEAKIYYN IILSLFTLLI TGIMSLFLEL NVNIKNDTHF  60
   61 YFIHNLSFPL LLLSIANCEK SFESISNHSV NLFSICISIS SMVIYKANNF VFSKKWPLFF 120
  121 KITIFALFFL FIVLDKYQYQ IIRIEFCAII YHLALLQLSL SSVSGGGQCT QFGELNIFSQ 180
  181 LISFLLLISL SNFKANILNS IFEWKQCINS ITAIAILLIP VNIIIFEMTL NYRKIPLEDK 240
  241 SKIKSFSKYL TIAALSILYL SLYNTAKYIH KVSTFILKMI IESSQIRTLI IYWVLVIFCL 300
  301 PIMFKLIVNL SSDSKKKKIF TRKIFHLFLI ALFFPQILSF NIMPTKESQG TIEFTVISIY 360
  361 LASCIFIYLE VMRKYRYREL TKLINKLLLP FLDNKDSIND LIITHICLLV GISIPIFKEF 420
  421 LLRKDIQDFD IVSATLGIAT VGVGDAFSAI FGILFGKMSL PGNKDKTFIG MIAFFISTYS 480
  481 YLQLTCFFSS SKYSLSKLYI ISFFSSLLEA YSHYIDNATI PMFSLTLYTN IR