YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66356822
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEENEKKAF VNNLLIQINI KTWFFWIVYS FLVFIIYFSA DYLYIFKNSI LGIIEINYLF  60
   61 YSFKSNFLKL KKENHINNVL INIKGLNEYD LEILKGRIFS KSDEYSREIV YNHKKPKFVN 120
  121 ENNRILLKAT LNDKYLNSDL DEIQNPIESN FETYLESQNI KEQNTQYSYS IFVSFKNCGK 180
  181 SSSKNTINLY NSKVSLFCLN NEITKSDFFI ILNDLYDIWF LKFTENEPEM TKYTSLQIYM 240
  241 YNLFDLEINY ENLPDFNKSQ SFLIFNNFLS QINQLLYIDI KNQNKYITKD SIDFQDNQKT 300
  301 YNRLIQNLNE NNYYHFDQNT FKLSIFNHFS KFNDTDHYSF TSKNSDFLFT HSIITNDTNT 360
  361 LLFPTMIWIN VIRSFILPKD YKLNFKSRIN NVTFQNHIRE ENQNLFLSDW QISAIQLIHS 420
  421 NYLINHIIFN IDRFFLTLNL YNKFKLPNHI LYAIKYMNKM ISNIHTISHN YLPTILQNSN 480
  481 NLLFNPEFHN KKTFNTDLIM AVYSPIAIPI AFLIIISMFR IIRHSSMKFE

Type	Start	End	Confidence
Cytoplasmic	1	21	0.91
Transmembrane Helix	22	45	0.86
Non-Cytoplasmic	46	498	0.90
Transmembrane Helix	499	522	0.88
Cytoplasmic	523	530	0.89