YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49081218, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLSKSFST LTAGALLLLA LISPRSQKLR FYLNSIIYIA GLGICSVWGI FVSILLSLVP  60
   61 GQRLNINKVV ARSFWRLTSP LVGIRFIVEG EEHFQAARPA VVVGNHQTAM DILYLGRIFP 120
  121 GNASIMAKKE LQFAPLLGQF MSLSGAVFIN RKNLKDSIKA FQQVGETMNN KKLSLWIFPE 180
  181 GTRSGLATPD LLPFKKGAFH LAIQAGVPVV PVVCENYNRL FDSRSRFESG TIRIKVLAPI 240
  241 PTKHLTAADA NELTEKVRQL MLDELRNMDA ERQRTDTAAS VNNDEASMAG VAGFFSKFVG 300
  301 TANSWQSVNS NVDKQEKRLR QNGTTGENPE DYHLVSEAQK KSN

Type	Start	End	Confidence
Signal Peptide	1	26	0.42
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	343	0.76