YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71024329, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.43
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTRKPAVKE GLDQLLCAIA PPLLPFSLTL VVPLSFLDVL PFCVASDSCS SLSPSPVPSH  60
   61 PIPSHPSYSL SPFPWSCSSH LSTSPDRSPG SIVSLRVHDD PACLLPQSLT TTTQHSFALT 120
  121 NSCNSTHPIV GVVAMVCAVT STEAKLQRGL AWGVNDNYGP RIAKGLIKWY WHWQDGPNPK 180
  181 FDGKLQWIPT FWGPKYYAQW NERKQEMKNN LPKYILSFNE PEIAGQSNLD PKYAAKLHMK 240
  241 ELEPFARKGV KISSPQMVYK TEWLQEFMKE CNKLGCTVDF IAIHWYGTTR DMAKLKRWIK 300
  301 TIHRTFNKPI WVTEYGVTAA SGPNMAAIKK FHMDATAWMT KTKYVKRAAW LGCFEINNPP 360
  361 DSYANNKNAF LNSNGSLRDI AYWYLYSQQP HRRSLHHSNR ALPTAHVARR ALTHKDEEGN 420
  421 DIVDDEDTFD APEHIVECDE YCQLRDKAMS AFELEHGAIN EEDEDDDDDD DDKEDDE

Type	Start	End	Confidence
Cytoplasmic	1	14	0.39
Transmembrane Helix	15	30	0.38
Non-Cytoplasmic	31	477	0.98