YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46101719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHSSMSMGD MGDGMGSASC KISMLWNWYT IDACFLSSSW HVTTKGTFAV SCIGVMLMVV  60
   61 CLEALRRLSV ELDKSLSRQL VQRYRLLQDP RKDSSANDAA TLESISSPRE ILLRITPLQQ 120
  121 LVRAVLHAVT FGLAYLIMLL AMYFNGYIII SIILGAGIGK FFCDWKSAAF AINLASPDHH 180
  181 SVTGLDQSTL AQRKLASLQK EDAEAQAGSS HTPSSVSTWT LLTFGVRTWC LHWSKVIQYD 240
  241 KYGISVSISL FVLGASVFLS SASRRVSILN TAVLPEHEEH EQTFVLPTYI IFTCRVFRLE 300
  301 NARFVIDAQT GSRESVSQSH VGFVRWIESR MTSSGALK

Type	Start	End	Confidence
Cytoplasmic	1	16	0.65
Transmembrane Helix	17	31	0.62
Non-Cytoplasmic	32	45	0.58
Transmembrane Helix	46	65	0.87
Cytoplasmic	66	120	0.93
Transmembrane Helix	121	141	0.79
Non-Cytoplasmic	142	142	0.46
Transmembrane Helix	143	163	0.71
Cytoplasmic	164	241	0.57
Transmembrane Helix	242	262	0.85
Non-Cytoplasmic	263	338	0.58