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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49080216, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRFPHISCL STLSLFAWLR IALHPHRARF PTLSRVDTEF EPIRQPRRMS SVYTQVVSLV  60
   61 LSFWPSLIGR QRFRPQSQLC PARFNITSFR CLVYLPAVLV RQQSFQLYQQ RDQQCSQSSS 120
  121 QRGQASLLHH FPSSRNEKAS LSDARPTKMS TIINDLGEEI QPGYRGNLSE SQQRDLRETW 180
  181 RRIFELFEKN KDVSERVMQN GGPSKVSKQK DTTPAKNEKD AGKDIPKDDK AKEEAKKAEE 240
  241 MKEMNEFIDT YGGPILRTTM WEFTKMDHPD TSVLRFLRAR KWDIDRALAM MAAACKFRLE 300
  301 KNITDIIFKG EDGLKDVPGF MNQFRRGISY IKGNTDKMEN PIYFIHVARH FTSAQKHEVL 360
  361 QDYVLLAMEN ARLLTTAPYE KAVVVFDMAG FGLKNMDWQC VLFLVKCLEA YYPESLQRIY 420
  421 VHGAPWIFKG IWQVLQPMLD PVVRDKIKFS SKAKDLEELI PSSKIRKGMG GTMDWDWDYI 480
  481 EPQAGENDIM KDSKSRAKIE KEMKQLTDEF EKVSREWIET SQIDADNPEL SYRREVLAQQ 540
  541 IRLKNYQLQP FVRAKNIYQR SGLMTMDGTV TWEYPQVNGK SITQVVNDRH NYGAIIKWLQ 600
  601 EHNEDTLEDS FGHKKLAEIC DDGTIKESYG GAKSAKAGKA SKDAKPDKKS SKKGAEAAGG 660
  661 AAAGAAAATA GAVGLKRSKS KKKEPEPEPE PEPEESDEDG FVDPESESEP EPEPEPKPKR 720
  721 SASTNKNLAR KPSKKAGQPE LDEERDDHQY NPQQPQTYTG AAVGAVTGVA AGAAGAAAAG 780
  781 FNYLRGANKN SNGAAGNGRN VVEEDEEDDN DEDHGVARPN QRQQPRTVDH YPDEDEEFDE 840
  841 DESPDDDQMS AYSDESITPE TAVRPDYMLQ KISASDCRID DNDCREDLAT VREAMALFLN 900
  901 SRMREAEELC MQGAGTRLYK AEGMALINSV KSVMTFEPAD FETAIMCCQH SMKIAGFLRK 960
  961 KQGAIGKLIS GKKGGFRSMS LVQLHAELVF AESQLLKSVL GIFYSGDSIG FVKQALGLRS1020
 1021 AYFLVRELFR FVESVDAEAE EAEVSGKRAD VIHLDQDFRS GVYLGNAVCS LVLSMLPTKT1080
 1081 LKIMEGFGFV GDRKFSLDLF ARAGGWSKSK PLPTISADEE GVRRPLCDIV ILMYHLWISS1140
 1141 YIPVTELDFE FADKVLSWNL VRYPNGIFYL FWSARLYAAQ ALPEKAIEYY RNAIESQREF1200
 1201 KQLHHLCFWD LSLTYLCTCD FARAYECYDV LSRESNWSKA IYQYAKAVML YETGMDDRAK1260
 1261 SATIMRTVSK LTKKVAGRQI PFERFVALKA KKYNAQQNRL PLPGLEFSYL WHCIGQTPVF1320
 1321 LLVENTLTRI DEFIDELESY HNPKSYGTGE NEYWSAYCLA FFLRGVALRF VAYPEPQTLV1380
 1381 RLPAEDTVGP IEEIQADAVQ SFNKVFEHGS KLDEVDRYLV YFAHYELGRL RGCMGQDEAA1440
 1441 KTEFRKVLSG KPLEAKGKGL IGGGSKANYL LSNMCQVRAH AAMETMRIQK SRSRTSFFHG1500
 1501 TEGSLASQSI ASKSTRSNSL ASSNSRTMSM TSRGTSLSSR SGRGSIKSNT YDAEEGYRAN1560
 1561 GNGRPRAPSQ TTDYSRRR

YRC Informatics Platform - Version 3.0
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