YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71022887, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.61
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSATASSSV SLIPPDLLAL HASFQRYSQD VINHQIPRLQ TCTSASLVTD FETEIASSID  60
   61 GLKRQVNDLK FAIDEAESEV ERREISHLAA TASQQLDEIR QSTRKALLSA RRSIESARTV 120
  121 QARAGLQLAA DSAKERTGGR AGSSGEDKLM TASQDVTDAL RRTVSLMSAE LEKSAMSSQL 180
  181 LEESSQTISS LSFQYGSLTT LMSNSVKMIK TMEREDLIGK GMVAAAFLFF LGCVGYIVYV 240
  241 RLISKGVGLL GFFFRLFGLN KLLGGLASRG GEDVEGKVGL LKQAASQVAS SQTVAVTAKV 300
  301 VSTAVLSATS TAAVTTAAQT SSAKQEVKEN IMDLQDDLEQ LVQTVMPQES AEPRANTLPV 360
  361 EHVEL

Type	Start	End	Confidence
Signal Peptide	1	22	0.60
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	190	0.73
Transmembrane Helix	191	206	0.52
Cytoplasmic	207	216	0.69
Transmembrane Helix	217	240	0.84
Non-Cytoplasmic	241	245	0.58
Transmembrane Helix	246	264	0.46
Cytoplasmic	265	365	0.63