YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49076808, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGTASHWAH AALDPATHLL PAVRSFYPAF SAYFRNTKTL TNVGTYKAFY ADADPFHSAM  60
   61 AFCALVSFYV WIMERITGNA SQVDGLWTFL PLIYSVHFTV HKHFTYQPAK LSLLQGIEHA 120
  121 TVWDKIEPRL ALMTALSVLW SARLTYNAYR RGMFKPGEED YRWPLLRKSM SRPVWQVFSI 180
  181 LFIAIAQNIL LAITALPNYL LLTTTSVKHV TQPVPRPVNK LILGDYILAA LFVLNLTVQF 240
  241 YADQQQWNYQ NYKRGKNPHE KPLPNAMLDP VTKLPLHNQN VMPFSTPEDA QRGFVTKGLW 300
  301 AWSRHPNFAC EQTTWWILYA FVPLTLLPAD LDLTKSHWSH FINYAILAPL AMNALFLPST 360
  361 RYSEQVSAEK YPEYKDYQKR VGMFLPIDTL LRSVYYNVVA KKEDKLRVEA NVWGKSQLNK 420
  421 KKRQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.47
Transmembrane Helix	55	73	0.81
Cytoplasmic	74	84	0.59
Transmembrane Helix	85	101	0.62
Non-Cytoplasmic	102	128	0.52
Transmembrane Helix	129	146	0.55
Cytoplasmic	147	173	0.82
Transmembrane Helix	174	196	0.89
Non-Cytoplasmic	197	221	0.79
Transmembrane Helix	222	242	0.76
Cytoplasmic	243	311	0.70
Transmembrane Helix	312	331	0.62
Non-Cytoplasmic	332	339	0.57
Transmembrane Helix	340	357	0.76
Cytoplasmic	358	424	0.65