YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46100862, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	1197	0.83
Transmembrane Helix	1198	1216	0.39
Cytoplasmic	1217	1223	0.71
Transmembrane Helix	1224	1247	0.87
Non-Cytoplasmic	1248	1253	0.61
Transmembrane Helix	1254	1275	0.83
Cytoplasmic	1276	1295	0.81
Transmembrane Helix	1296	1317	0.84
Non-Cytoplasmic	1318	1321	0.64
Transmembrane Helix	1322	1339	0.89
Cytoplasmic	1340	1346	0.82
Transmembrane Helix	1347	1369	0.87
Non-Cytoplasmic	1370	1380	0.73
Transmembrane Helix	1381	1404	0.82
Cytoplasmic	1405	1424	0.95
Transmembrane Helix	1425	1444	0.92
Non-Cytoplasmic	1445	1449	0.68
Transmembrane Helix	1450	1471	0.85
Cytoplasmic	1472	1480	0.87
Transmembrane Helix	1481	1500	0.91
Non-Cytoplasmic	1501	1527	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSNVGSKA AACLARQAGV DAPHLQVIVQ RHSLPRHLFY QPRRFKLCSP GQKLGFSTTS  60
   61 ASQASADSKG KYAGASSADA SQIDSKITSS VKVTDSRSGQ PATSNAAERS SRTPQVDDVL 120
  121 KADDNSQSAK QSSSSSNKAS SSSEQASSQQ QQQTSSTNFR QQDVQSSASG QQTSNAAAAS 180
  181 TGPATGEDLL KQRFFHAQEQ NKRVYSGLTS PPNPAALYPS FTTPSSDQSL LPPGTSSGST 240
  241 STWSSPSSSS ASTDDSQQTT STSSSSSDAS GTPQPTTPPS GDAGGDVEFD QRLHRHVSPQ 300
  301 SLQSLQVPFD THGFVKRLEA GGWISTATRM QRAAANVKTV KGKQNQIKSS AHELQLQIAR 360
  361 RHDPAEAIME GVRHLITTRG RQLAHACLNK SDVENQAYLF KAALSEIRTE VQVRGRNDAA 420
  421 GLRSITTLLQ REVDALEQKM KEDVERLKHD IQVDMNNRKA ESKEEQNNLE QEIQDLNNRF 480
  481 TISLSDLKTE IEQNVKWDAT RRSLFLVFGI AAIVAANLAI ADYLTRDDEA VKAAAIKEPV 540
  541 NAGIPPASAS LGWATEGRIL SVLPIMLLKP SSRLVATSQR VCRDLRRYLL CQLPAVATAG 600
  601 LHTASHRVAQ QHARDCGDWR AALAGSAEPR RSLSSTAALN KSPTNELRIP DSDIVIRLLS 660
  661 DGVSIESQHL GLQPFRFDHV WLRDACQAPQ SVHPSNRQKL FHTSDVPLEV ALLDPEHPPT 720
  721 LITSGDEPAL RLTFAKEHAV VNAFTATFGE AKQADAPHTS DFPISFLLRH AVETFYADTH 780
  781 MDVMAVPEYW AAKDLTHFKS TPWSPDAPLA SDAVESGAGA RPARIPWDAI RPNDDPDSTE 840
  841 LTEARYALTE AIIRDGFAFV TRLPTDTTAT EEGPQSARLR ELANIMGELR NTFYGLLWDV 900
  901 RSKAGARNIA YTNLDLGLHM DLLYFQNPPR FQFLHMLRNK VRGGASIFVD SFKVAERMWE 960
  961 EDRELWEVLT KVPVGFHYVN DGRHYRFTHP TFELAHDTEG HAGGPLAGTT MPRLSAVNYS1020
 1021 PPFQSPIPLH PTKHLKTPEQ RQTFYLALKR FSDLTLAEEF RYEKQMEEGE CVIFDNRRVL1080
 1081 HSRKGFEWDE SNPGEIKRWL KGCYVDGDAI WSLYRTLRTK VRGRTPLTAS NLGRRSFTSS1140
 1141 STRAAAASTS ASTPTAATTA VTEADMDVAS FAPISDDPTV VDLRSLGGLR SREPSTSFSA1200
 1201 FRPVPPLSTA TLPKLYKQLS KSRLTFLVVL TGMAGYALCP ASLTVAVASP VTTLLALTAG1260
 1261 MTLCSAAANA LNQLVESPYD AQMQRTRARP LPSRSVTPLH AFTFASVSAA SGVGLLLTTV1320
 1321 NPLTALLGAA NVVLYSFTYT PMKRSTIANT WVGAVVGALP PLMGWAACTG TLHTSTDVGG1380
 1381 WSLAALLFAW QFPHFNSLAH TLRAEYARGG YRMMAVTDPA LNRRVSLRYA VALLPICTLM1440
 1441 IPLSGIVSPV AYAVLSTPLN LLMAHAAWKF YRERTVKSAR WCFWVSLIHL PAVMLLAMGC1500
 1501 KPEVWDGLYR FFGWSTESSG ESQEKLV