YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49075656, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIHPPAAS SSSGRVGGFS HSNRDSLYSQ LRWSSHHQPT TRKRKLQLLR SYLPDWIITI  60
   61 LLAGLLAIIN NVHGFRREFS LTDTSIQHTY AVHERVPVWL LGILAVLIPV IIIAVFSLVI 120
  121 SRSVWDLHNG LLGFVLANAL TVTITTIVKV TVGRPRPDLI DRCQPAPGSA NAIPYGLVTD 180
  181 IICTVGVNDK TLRDGFRSFP SGHSSTSFAG LTYLSLYLAG KLHLFDGRGH AVTAWLCGTP 240
  241 LMAATLIAVS RTMDYRHHAT DVIAGSLLGL IIAYWSYKLY YPPLAHRQSH KPYSPRIPAE 300
  301 HLSGANEQRY ADVSGEDGEA RYNLTHGNGG NDLDTEHEAD NEAPGNYTKP SAGGRALDMS 360
  361 MDYPEHDTPD KSIPVNLARD SRSAFESPDP RSRRAAMRRS SFLNGTSAAV ATLLDSSDSA 420
  421 AEVGRKSARS TPSHSIPRTG KLNERPRGVV GISFGCQQYH IVPLYTSTVF VFWRRSMLKQ 480
  481 RFEHGFFFHH DDQMLNVGFS TAAVHLDRPS SIDANLSWDD RRLTQLAFNH LLGTSKRRYQ 540
  541 PQGSRNYPSW TSNDPQLESI PTSEQRDDLI DDPVRCLLRR EQI

Type	Start	End	Confidence
Cytoplasmic	1	51	0.78
Transmembrane Helix	52	73	0.88
Non-Cytoplasmic	74	97	0.73
Transmembrane Helix	98	120	0.93
Cytoplasmic	121	129	0.63
Transmembrane Helix	130	150	0.86
Non-Cytoplasmic	151	172	0.64
Transmembrane Helix	173	187	0.25
Cytoplasmic	188	200	0.44
Transmembrane Helix	201	224	0.71
Non-Cytoplasmic	225	230	0.43
Transmembrane Helix	231	250	0.93
Cytoplasmic	251	257	0.47
Transmembrane Helix	258	281	0.82
Non-Cytoplasmic	282	583	0.58