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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46100068, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.47
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRLKFGSI ALVVGVEVHS IWTSAKAKAC LWFEVSNYCS VEGGSFFASN TTKTQKHLIN  60
   61 QKKLKKQQQQ QQQQRVGVGV GVGGLRGEIW AWPKQQKKSE QASYLNEQTW ACNESRIDSS 120
  121 SCDARIVSSE LGVFAALTAE AVKAWLPLSA ESFQSCLSCL SALSSVHRSS VHPQLDDPRF 180
  181 ATSNARSVLL LVTFRLTRGW LAGWLAGRFD PLLLILFTST GLSFCVCFLV EIPLGAIRSS 240
  241 PSFSVAVDSS LLSRRRSQPR HSFACSDTAR QPSNLNAINT RLPPPLRRLH LRTFSRLCAT 300
  301 IHPPVGVSPY PKITDLLLHS SLSLSLSLSL SLSPIAFPPS PGNPSHLSVL RFFLRASIDH 360
  361 RRYLSSSSML PTFVVLPGTP PLSGNTTPLT EDPHSLKHKQ AVAILSAIPS PESATPSNTL 420
  421 SASASDQHPP LSQLHIIHPN KALVRSSAPL SYYDPGESKP PTPPGAEALH PFLVSDSCLA 480
  481 STATMSQAPS APQMSLLSQA MQQHLARQQM DTNSAIDHHA THSAVQTPSA SSLPSPAFAG 540
  541 PGSPFAFTGA SASEAGMRPP APHQSHFGAA AAQMQPLPFG GYTNHSHSRR QSGYATNPHS 600
  601 AAPSAGPSRS SSPTRALHSA SNLSLDAPSH PVGMPHNAQN LGQNQHAGQN QMGTDYSSTF 660
  661 SSQHTINGYA PPAHPGVAPG MSQTPGSWSN QSGITYAPTP QASFAPPQNS MMPPVGFQPS 720
  721 PHGQSQQYQH QHQHQHQHQQ RQQPQSRQPP MLHLSQQPPQ FSSYRGPPEN LLSPQTASSD 780
  781 FAGFFPPPNA TPQATPGTRP AGATVQQPGG ASRQSTAETR SRQSTGYTDE LSNMAAAIPM 840
  841 NRRGSAGAED DIDDQSLDPD EMSKKDPLAT QVWKMYAKQR SQLPNGARME NLTWRMMAMT 900
  901 LRKKKEQEAV DAKLALEAQS NASNASRSHA SSARHSPTLS SRSGPASRRN SGSFPAEPFN 960
  961 GGFTALQPEE TGPADPHSRA SGIATKGKTR FAEVIQQEEE ERGRRGRSPR TPESAAPPAG1020
 1021 AVEIMDWRMK SKSRSRSRSV SAMDVDWRGV SRSRSRAPAR LDTIEDEGTP DGNNLFSRSA1080
 1081 PNAASAFSFA DLAAFDDTDA FGAFDSALDT DDISDLLKSN QSLQVSGASG SGATGNFDVG1140
 1141 STGPASSRRT ASAVRKAQIQ TAFRKAAHTD LFGADLDAWY EAAEASSKAA DAKKSSLDMA1200
 1201 SIGAANSFGA PFSTLDSIPG IGDFVGIAAN QHPEYGFLPR LVRKTSFDHK VRERSISRGP1260
 1261 RRDQLTAEAM NNRKRPFRDD LSPARPAIQM PITTDQRIAA GLSRNIALLG GRGAGSSQLA1320
 1321 NLPMTNFDFA VPPPGGLNHQ QMHFSAGGFQ LRSDQRGQET ATDFDNLLET LASQAGTPLA1380
 1381 SPAGNLMAGA SASPQGGLGS GSGASPVAPG VGNAMVGSLP HGAQNSSDLE AIMNMFYNSD1440
 1441 AGIGGPQPSF THINPNQVFG GGPMEAASGS LGNLTGSGDE GSSTWTYSPS SSAPSNAATP1500
 1501 PGLQQSQYQS SPLINAYRRE SQLAPEISGS ASSRSNASPS MQAIQKAAAL SEASRRNANG1560
 1561 VHARSVSGPG PSSGTSTNLK DLPSASSMAT AEPPTVCSNC HTTKTPLWRR DPEGQPLCNA1620
 1621 CGLFLKLHGV VRPLSLKTDV IKKRNRASGA QRADARARAS IGSGGGANAS NAPAAGHGST1680
 1681 AASSVKNGAG SSAAQSKANN NGSVAGIRTG NVPIAPAPNP PVSSPGSTGL SNSKRHTSVL1740
 1741 FSSHRASVFV IVEMSDGVSS DPRFVIELGR RCFLHISKIH RACSVFRVDV RRVMQGPPKL1800
 1801 AFHASVERGT GGLGRHRVVF DHHHVRLFRE EFGALVQHAD AGIEITSQSL KAFGSTIGVH1860
 1861 EMKVTTASAT LLSLLSVSVL RTAALPLRLN SLVPTWSWTT RMRDSHGDIF ARTDADFDNV1920
 1921 SYADVVKIGA HDSMAIGTRI VHNQHLTVTQ QLDLGIRLLQ AQGHPWDNPS SANPSGISLC1980
 1981 HTSCYLQNGG YLEDWLGEIL AWMDRHPAEI VTLLLTNPQN ADIDDWAQGF ESLAVYQRAF2040
 2041 TPRLPDISRK AWPTYAEMRA TNQTLVIFMD RGTSFSKYPY IINEFANVWE NAYDQTELPF2100
 2101 NCSVERGKNP TDRLGLINHF LNDELVATGI MYPDKDQLNQ VNAASGSFGL ISNFHNCTAQ2160
 2161 HGGTRPTFML INFSDVPSSG GALAAAAMLN NLTDAGVLPV TSSAAITADR GPTRVLPLSC2220
 2221 SNKYEHWTMI SADGCSTSES IAITSIIGLT THMTGSQRSS SSGGLHAAPT PSPTGGRSFI2280
 2281 DHAKLRILLA PVGGISEADF AKWCDYVRSF ETIRLADLPS NCTARRRAAA NSASTSTASS2340
 2341 SSCAASPILQ SGEIHLSFVT SYDPDHSFLA PFNMHRQVLG ALGLATYSNN AVQKQQLDAS2400
 2401 PSALRELHPG ALVHRVFGFD SGAKRPETVD LSSIKNVVAA KINQGQRSAS PLAKESEIEH2460
 2461 LDNSTNESAS ASQNPPMSPD ASGFSAHRGG GLIIFPAVRK DGKDVRFYLK TLLAELVASI2520
 2521 LDGLDQIVAG LQGTPLETPR ETLDGITPNK PSSSSSSALD STATWLTKTS FAATGAASRA2580
 2581 SSLFTAFSSS TGGDIGTSRS TPTSSRPSSA VGGGSHPFDL SSPTSVNSSP TSENTTRTKI2640
 2641 LAANAHKKSA KRVTSAAATG PIGTGRFAKV RADFHLLSGN LWDALEGYST ALNALGKERA2700
 2701 LAGGQDAVWF ASALEGFSVT RVLVSRMGGT VLEKAPCFDL PWSAAAAKDK DKDKDKDKDG2760
 2761 ITRPYAKQSW GEIAEAYTIA LVIYSKCLAP PSVLLEPAKS VTNDSPRDYT HPLIHASACT2820
 2821 QYARFLLAVW ASAGWNGECF DQLVYGGVPP SLAEEKPSNA MYLGFTAASG IARHEIAAAA2880
 2881 SSALSHSIIA LKSTDQIALL STLTSIFGCI GFSRREAHLL RHLQSTIVCM LEKAKRVNSR2940
 2941 APTTASLPIL QHEHFGKQND ELLGDIVAQT TYDSLGRGPE AVLVLAMQVC ETYGIHVEVD3000
 3001 PLRNIPSYHI LSRASEGLRS AYTSPALDAS EEWRSSGHRA PAAAANGDVV LMTPLEIANE3060
 3061 AAFGWKEQQI ALLKETIAIA ELLADYVGMA FFGAILLRDF HTLLDAHEQR DLMVGMQRAV3120
 3121 QAARWAGAQD LALKYWGPAE PLCSLELLPP TPERMPHERN AKQLFADRTE AAAGDQGVAG3180
 3181 LNNPFFWNPN RSSASKAKTI GVQKERIYVM ATLQNPFAVE LHIDSVKLVG EGAEFVAQEA3240
 3241 ESISIAPRCF QTVRLCGIAH TTGTVVLRGI SLTLAGGCTE EQTFLLPIFD QENVKYRRKQ3300
 3301 AAEQDDRATR LKVSGLDARA SVIKQRAGAG TTEAKQTVGR WMQVTVVEAQ PILAAYCNDL3360
 3361 IPLGGLDLFE GESRIIHVEL HNLCTWLDVN LVHVTFNDNV SDASKHALTE GELMPQDVYE3420
 3421 IEWDLVHQPV LSRTEAASTS WVHIEPGATS TIAIRVRGKI GCTRAVVAIE YGHVERDRAQ3480
 3481 STFWVRRLEI PVRMSVHPVL VCTRLTVAPL GADEATRLTT ECVRSADAIA ANLVTLVDRT3540
 3541 HADARATVDK SARDGQTAVD ELVDAVQTLV QTQENELECS LLSLHLSNVH REDVLLRLAV3600
 3601 DTHQGEPLRI YRILRAGSST RILVPQPRLD LDPGTGHAFG VCTHTEHASE TVSGRDGMFL3660
 3661 PIPSIWRESA TRQFIVSKIQ LDEQEDRQVR KNFWYRQALL GGLSATWIVL PCMYTGTACV3720
 3721 GGDWADEAVH DAVRFGTVPL RGIVSGGGLV LDESSLANLA KDAVKVDVSL RAGVDCIRAE3780
 3781 SFTLVSVTIT NRLARRIDPI VRLIATAPTT TTDASLLDNV IISDGTWTAS PRSRTLPHRG3840
 3841 SHSTYTWNVT FLSPGKYAFL VVVQEASASA LADKPDRLAF VSSPYPVDVL PSA

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