YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71019589, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQASASTS STAVVAGEQP TPQQLLFAKS IMLTFELWPA MRLAVSEEWG GPDSADKRDF  60
   61 LLSHLCDEYG NPGPAFEPDL DDLADVLEHY MVDEYEARLE DGSPDWVAGR IVGLHRVIFA 120
  121 PGDDFARAQA AVAELEKAYE ELKGKKATFE QGANQDGEVD SHSEDEDMRD ARTMARQHGG 180
  181 ITEADRQGAR VGLEQDRARV ESEPQQPIID EDGFETVVSR RRPLLGLYCL VEIDRSLTLC 240
  241 LKGRHAVTIE WPQTPISAAE ANAGWDHESQ LT

Type	Start	End	Confidence
Signal Peptide	1	16	0.62
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	272	0.99