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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71019759, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHDRKPAAA SQPAPAPLQP PSVTIQPLIS FSTIDAPSQR FYAVSTAVLI QACKYSTIVR  60
   61 GWIASPSSIS ASSIALHANP TTVSLSTALF LNFALLFVLS RLGIPLLDPR LASYQPPSSV 120
  121 PTPQAKSAVL QPPKKVGLTY AHYLALFVAL SFTDATLLGS ASTNPLILML KGLLSLFQLA 180
  181 AATLGLSLPT AGLLPDALSR QLAINEGHVR VRDLIQPKSH ILGQHTIHIL PHSTAKLLPS 240
  241 SACYCVGPQT PQVTVPVLFS NAHPDLLQYS ITDFATGHSS YFNVSIDHLI PFGATSSDDN 300
  301 ADELNVINAA ARSHSSKQTS RQSNLLDGED ALDDPTSLLK GLSYADRARI RAERRAKSLS 360
  361 KRSASLDTPK TKHTPSNRNN QQLLWHLPLT QPGRIRLERV LDKSRNDARI STSEVLVVQC 420
  421 PSTRLIPAVS TPVGTTHPLQ TQHKCPGDRA DFAAQVSGVA PLELEYRRIF DPLPFAGSSG 480
  481 RPKDHSRQDT KRKISRISPS HHTSPLLLPE AEALLSPAER LALARERTRA ASRRDVAGHE 540
  541 DFSWAVSVDV DMPLSSIELE QSGNYTYLLE SVTDACGNRV AVKSNRDTPL SLTHKARKKT 600
  601 NRDIASASTY QQSVIAHTRR SVAFDSRQCR PGHPLPLLRN VNGLDLTLES SIDAEQSGDW 660
  661 DVKVSFQPDN TAAGKGLWAR QAAKPSVMQL TLPANSSRTP FTIEKPGTYR IDDIAGPFCA 720
  721 GEVGSSWTCE VVDVPPPTAQ INFSSIEDRC AGPVGVKAMS VLTGIPPFQL EYEVTKQGRH 780
  781 PERKIRTIFD QTRDELDFRP DVDGAVTYKF VKLHDSNYRG IPLDGPSFTQ VFHPLSTAEF 840
  841 TAPIRMHDDR AVMQSCSGKQ AEADVRFSGA GPWDLTYAVR AGDSVETKVV QGITQSPHKL 900
  901 KIDIPKSVAA SGGLVTVSLV KIRDARGCEK SLATRDLNVE VRRVQPSVGF LPTKAEKSRH 960
  961 LEVLAGKASR LPVRLSGQGP WHVDYSWKAD ESADEVDLSA SLKSVDAELL AEHPGLYTIK1020
 1021 HIRDRYCPGI VLQGQDEFRV TVRPQPHVQF ASDAGVPARN GSLVRAPVCR GQPDSVDIVM1080
 1081 TGQFPLDVEY DHIAPSWSAS NEPEAAAPLA SAAHEVALHG KRRKTAFTSA LSTTNLELST1140
 1141 ALPGWHTYII DSVGDAVYAP SRLQGFSMES PRRLEQMVLA LPGASFVGVS SKNRRPSLCV1200
 1201 GDGLDRLSSS PLTLKLQGKA PFTVMFEVAP VSSTYGEDTY KFTRSGIQSH EYKLDLKTDE1260
 1261 FAFSSKGFWT IRVVEVTDAN QCQAAKMAES KRAGQDDKSV LIEVAETADI ASVSTRQDYC1320
 1321 IGEKVEFLLQ GSPPWTVSYD FNGESAQAAV TSAEFSRIAE RRGVLEIKSV AHQQNQCRRD1380
 1381 INARISHDMV KTIHDLPSVR ISEGTHFVED LREGNQAEII LHLQGVPPFS FTYQRSEPVD1440
 1441 THARPKVLET NTVSGILQDK YSIWAAVEGT WSVTWLQDRW CQVSLDYQSG AATPLGKSRL1500
 1501 AIQNDAHSA

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