YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71019269, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARLGFNTH DSSSASTACF ARSNCIAASG YSTMASYGAS PYASTSTSSH AESPLDKVRE  60
   61 YTSKVEDLID QYTQPIKPHL PALGRFLIVV TFLEDALRIM TQWSDQKYYL QRHRGFPWGI 120
  121 SHIFLLANVV VMCAGSAAVI LRKYPEISVG ALFGVVVVQG FGYGLIFDLN FFLRNLSVVG 180
  181 GLLMVLSDSF AAKKNIFAGL PSLSETDRKI YFQLAGRVLL IFLFIGFIIQ GEWSVARVLV 240
  241 SVLGLGACVM VVVGFKARWS ASFLVLILSV FNVFVNNFWT VHSAHPSRDF LRYDFFQTLS 300
  301 IVGGLLLLVN MGPGGLSVDE RKKVT

Type	Start	End	Confidence
Cytoplasmic	1	81	0.55
Transmembrane Helix	82	99	0.39
Non-Cytoplasmic	100	117	0.76
Transmembrane Helix	118	141	0.89
Cytoplasmic	142	146	0.75
Transmembrane Helix	147	167	0.86
Non-Cytoplasmic	168	171	0.72
Transmembrane Helix	172	192	0.80
Cytoplasmic	193	209	0.89
Transmembrane Helix	210	229	0.94
Non-Cytoplasmic	230	234	0.78
Transmembrane Helix	235	255	0.92
Cytoplasmic	256	262	0.75
Transmembrane Helix	263	282	0.93
Non-Cytoplasmic	283	294	0.84
Transmembrane Helix	295	317	0.86
Cytoplasmic	318	325	0.89