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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71019559, gi|...
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQAGQSFA HSTAPIRPVR EVQFGILSPE EIRAISVCKV EIPEIKDEAG KPRIGGLSDP  60
   61 RLGTLDRNYK CQTCGEGHQE CPGHFGHIDL AKPVFHIGYL GKVKKILECV CFHCGKLKAD 120
  121 TVTDPVFDQI VKATRGSKKR RFQRVWEYCS KKMICEADDP KDEDEMGFDE QNKPGHGGCG 180
  181 RVQPNIRREG LKLFTQWKKG KGEDEDGEEN AIAQAEKRPL PASEAHTILK KMSSHDIAVL 240
  241 GLSEENARPD WMVLTVLPVP PPPVRPSVQD GGEDDLTYKL ADVIRANATL KKMEQEGTPA 300
  301 HILADFEQLL QFHCATFMDN DIAGQPQAMQ SSGRPIKSIR ARLKGKEGRL RGNLMGKRVN 360
  361 FSARTVITGD PLLELDEVGV PKSIARNLTY PERVTPYNRA WLSELVRNGP NDYPGAKYVI 420
  421 RDTGERIDLK YNRRSDMALQ PGWIVERHLK DGDYILFNRQ PSLHKMSMMS HRIKLMDYST 480
  481 FRLNLSVTPP YNADFDGDEM NLHVPQSEET RAELSQIAWV PRQIVSPQAN KPVMGIVQDT 540
  541 LCGIRKFSLR DCLLDYQQVQ QVLLWVADWD GVVPMPCILK PKPYWSGKQI LSMCIPKGIN 600
  601 VFLDKDKGLK NNFLKDDGVY IENGEIMYGV INKKVVGASA GGLIHIIFRE KGPVVCKRFF 660
  661 SGVQRVVNFW LLHNGFSIGI GDTVADKATT DSINQTIAAA KAAVMDYIKY ARHDWLKVEA 720
  721 GMTLRESFEA NVNRVLNQAR DDVGNHAETS LPDFNNVKQM VVSGSKGSFI NISQMSACVG 780
  781 QQSVEGKRIP FGFRHRSLPH FTKDDFTPES RGFVENSYLR GLTAQEFFFH AMAGREGLID 840
  841 TAVKTAETGY IQRRLVKALE DVMVCYDGTV RNSTNNVIQF AYGEDGIDGA QVETQTLLTL 900
  901 KLNDADFRHM FRVDLHDGGF KKGTLRPGLG DWSQELQDLL DEEFAQLEFD RNLLRHEIFQ 960
  961 SDQVQVRLPM NVARLVLNAQ QIFHVDPRKP TDLSPAEVII GLRNVLDRLI VIRGDDPISR1020
 1021 EAQMNATLLF KIHLRSYLCS KMVIEQHHIN KEAWEWILGE IEGQFARSVA NPGEMCGTLA1080
 1081 AQSIGEPATQ MTLNTFHYAG VSSKNVTLGV PRLKEIINCA ENIKTPSVTV YLTEQYSQSQ1140
 1141 ESAKVIQTAL AHTTLQTVTS AVEVHYDPDP SATVIEEDKD FVEAFFAIPD EEVEASLERQ1200
 1201 SPWLLRLELD RAQMLDKNLT MADVASKISA MFGQDIFVMH SEDNAENLIL RIRVVDNDPE1260
 1261 KEAQGEEEIF LKNLASQMLA EIDLKGIKGI RKVYIVQQDN KTRRVDPITG DWRTVSEWVL1320
 1321 ETDGSNLAEV LAVEGVDAIR TSCNNPVEVF RVFGIEAARN SLLRETRAVI EFDGSYVNYR1380
 1381 HLALLCDIMT SQGALMAITR HGINRTNQGA LMRCTFEETV ELLIEAASMG DVDDCKGVAQ1440
 1441 NVLLGQMAPM GTGAFDLNLD LEMLKDTIVN HALPYDTLLA SRSLDAAGGK TPGAMTPYDS1500
 1501 SSPASDDAFR VHEQAMFSPL AQTGGDEGGY NDYLLSGTSP MRTPLGAQSP AGYGFSPVSP1560
 1561 GYVPTSPGYA TSPAGALGGM SPWTGNMGAT SPAYSPTSPR IFGGATSPSY SPTSPSYSPA1620
 1621 SPNYSPSSPA GAGYSPSSPA GRYGAATSPQ YSPASPKFSP TSPNYSPASP AYTPTSPVYS1680
 1681 PTSPAMAGRG GGKGFSPTSP AYSPTSPQYS PASPAFSPTS PQYSPASPQY SPTSPQYSPT1740
 1741 SPAMGMGGAS AGGPGAAAAS LRRSRMSNKP AWQR

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