YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49074142, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	160	0.92
Transmembrane Helix	161	183	0.93
Non-Cytoplasmic	184	234	0.73
Transmembrane Helix	235	254	0.73
Cytoplasmic	255	266	0.83
Transmembrane Helix	267	287	0.80
Non-Cytoplasmic	288	294	0.57
Transmembrane Helix	295	318	0.83
Cytoplasmic	319	328	0.79
Transmembrane Helix	329	348	0.89
Non-Cytoplasmic	349	359	0.75
Transmembrane Helix	360	378	0.90
Cytoplasmic	379	399	0.75
Transmembrane Helix	400	418	0.69
Non-Cytoplasmic	419	425	0.57
Transmembrane Helix	426	448	0.71
Cytoplasmic	449	657	0.89
Transmembrane Helix	658	677	0.66
Non-Cytoplasmic	678	682	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCSASTTAH LHQRRAPALR EASSSSVEED CKISGSSLGR VEPSSGSNTR PELSLNTSHA  60
   61 KQRASEVDAK NQKRGHIQKH EKIERIGLLR GSSYVKATDK DSVAEHELTT SIGLQDDAVY 120
  121 DAYLPAPIAF VRRYIVAVLR KEAPLHQQHQ RLMRRPWLDR YFVNTSLLGT HSFFLVFLPM 180
  181 VFWLGSPRFG RGLINVLAFG VYLSSAIKDL FCVPRPYSPP VTRLTVGTHH LEYGFPSTHS 240
  241 TNSVSIALYV YLWVRRMRQA ADPTHSTLFD SAFWEAGLLF YATSVVYGRI YAGMHSVIDC 300
  301 IAGSALGAAI TAVQWKFFDH IEQFVKIDSW TVPAAIIPAG LLMVSVHPQP VDDCPCFEDA 360
  361 IAFVSVAMGV ALARWCIRFG VVLHTDPFIH PFSRLFDPSL ASTHLSSPVA SATPLIQIPV 420
  421 AGAAEIWIKR ALVMTIGLVN VLLLRVIVKT ACKVILPPTF RLVDSLIGFS LPRRHYTPAS 480
  481 DYNKIPLADL SAVPSVLDLP SQIIVTDESG HQQMIQSPVL SPTGASRRPG VDVRSGISNG 540
  541 SAFSPSPLAR SPLASPVPSR TPSPNPIEMR RSLASKTKSC KPRIEFTIGG TVDEAEADHA 600
  601 ADASADLPIP LTQSKAHPTF IAPDEQLART LAADMKACSP KEVEKEVKHY DADVLTKVIV 660
  661 YTNIGLFSAG FIPALFQHLG LC