YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46099166, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTATASVG AAVASIPTTL KTVAHAVSAT ASTSASTLST SEVIHKEAEY GAHNYHPLPV  60
   61 VFDRAQGAHV WDPEGNQYLD FLSAYSAVNQ GHCHPAIVGA LVAQAQKLTL SSRAFYNSAF 120
  121 APFAEKVTKT FGYEMVLPMN TGAEAVETAL KLARKWGYMK KRIPEGKARL LSVSGNFHGR 180
  181 TLGVISMSTD PESRTGFGPF LDRVGPGVDD MTIRYDNADD LEKVLDKYGH EVAAFLVEPI 240
  241 QGEAGIVVPS DGYLKRVQEL CRKHNVLFIC DEIQTGLGRT GKMLCHQHDN VRPDIVTLGK 300
  301 ALSGGVYPVS AVLADKEVML CIKPGEHGST YGGNPLGCAV ASAAIDVLVN ENLCDRAEQL 360
  361 GARFRAQLRD IQHPLLASVR GRGLLNAIVI DEQKSTKRRS AWQLCLLLKS KGLLAKPTHV 420
  421 NIIRLAPPLV ITEADLDRGV EIIKQALDEL DSLDSIPGDD QH

Type	Start	End	Confidence
Signal Peptide	1	26	0.95
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	462	0.99