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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PRM1_USTMA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFHPNAVDA PPSYLHQHQA GSPLYTQNTI RPNANSTDLN SPHKPPILQP WLGLQARLFL  60
   61 APISIPLISL LFVAARMLSS SNEATDSISS AKGKLLSACS AAEGTASLAA SFPHFLAAST 120
  121 NVQLALSVTA TVHSAARVFD LSMTAIQKIL TYIVNSYKSL FMCFMELLVR GALAVLITAV 180
  181 EFISQAITAA TLGIRSAIQE SITGVNTLLA TAVGAINDVI GVFGQHVNPP HIAVPSLTSL 240
  241 ENITLPHEIQ DGLVKLNATL PTLQQLKQSM DALIETPFEE MKREVNATLA SFQFNHSVFP 300
  301 VPEMQNVTFC DRIDTSPLDE LGNALKNVAR WGLVALLLIA IVVMLIGVAW EWWKWQKEVK 360
  361 AVERTRSLWL AQRSSAHSDG NDKFCDNILK TENLMSLLTI SQHPLISFCS LNYCKRLGIR 420
  421 TRRAQDRCAW LLSFLMHPAS LACLFTGVLG LISVLMQAIL VHSLSHHYVS SIDTSLAHLS 480
  481 SDIVNLVHDH TRNASVAFST SANTVILQVE AELNDHVFRW VDTTTSTMNS TLNQFVDGLT 540
  541 ETLTSTFGGT PFNAPLQTFV QCILGQKVQG IEKALTWIHE NAYVNFSVVP ADVLMLRPEQ 600
  601 QEAVLRPVRE AMLGSRDDQG GGNGVVGHVI SRYMEHLHQE KILFTALIGV YAIILLIGLL 660
  661 AVLYATLAER RMHDDDETRK KVSRDESEEK LRSDLQAGPG GAGIARLWSR RPKLNAGCFR 720
  721 AFSHPPVPVS AQNPSSKIDH AARFPSSAHS SRPDPIHVTK DSISYPFQMH HSLNTSPSTR 780
  781 PTQPTPLQQT SNPDRDTVQS LHHASTTHNQ TASTRTKEYD SWLCFLASYH DGEATVPAKA 840
  841 PEAVEGAQDR FHRLFGCSLR ASPTVATFNH HVSAPAVSSD RAEIEVEDAR FRETLDLGSM 900
  901 QDWIGSKSPI PPPAGRGGSH SPRNTADQLP EVQLTRSGGC VGPHSSDSTQ ETYAFTDSVR 960
  961 LPPGPQPQQK RVVSSQSISF FAW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle