YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49073508, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATSAAQRQ PHGRRSKNLL VASLALLIQC TDTIAASKQT LSPFDCSNVA VSSKQSFDLS  60
   61 KIAYPIRVSS KESTPPSETK TFIDIDLCKP LEADANRDEK DQCPRGTRIC ITIEAIKDDK 120
  121 AIVTQAIPVA YSDEAEGKKI EAKVEWGEEL EGGEKSIELQ FPGATYAERE QKAELELVCD 180
  181 AKADADEQPS VRSYDRAQGK LKLRWATKFA CSSAATKPGS GSPSKGGSDS DGDKGSDSDG 240
  241 ASASGGWGFF HWLFFLLFVG FVAYMGVGMY NNYNNYGASG WDLVPHKDFW RESPYIARDA 300
  301 ATHVWQAVSG NRGGGGFSGA GGRGAYEPI

Type	Start	End	Confidence
Signal Peptide	1	35	0.98
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	247	0.99
Transmembrane Helix	248	268	0.83
Cytoplasmic	269	329	0.87