YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAM17_USTMA
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVAIAAARY AALSAGASSS RSAIMLSSSH RALSTSSKVA SSSSSSNRGT FSPTSPILFS  60
   61 ASSSSSSSSS PSSSRELSHL SWDKYLQLRR SRRLAGMVTT IPTTLLAGAA AGSYFLTLEL 120
  121 DPTNAIAGLD PVYINAGLTL ACTGLGWLIG PTVGNSIWGL LHRSDAKQIA QKDHDFYEHI 180
  181 KRNRVDPTRQ SVQNPVPDYY GEKIGSIKQY RQWLRDQAAF RRKAAHGLEQ DA

Type	Start	End	Confidence
Cytoplasmic	1	93	0.89
Transmembrane Helix	94	116	0.90
Non-Cytoplasmic	117	135	0.84
Transmembrane Helix	136	158	0.85
Cytoplasmic	159	232	0.96