YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46098819, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSSATSP SSPPHSDLPE QFGRKAYQAM QLFPSIAEKQ EGWLQSTVRT LGSYAQISTP  60
   61 AYSLAALFAL STPFGFASPA QAAAEAAAKL QYQKHIAQLA HSVSSQGSNG LVARLVAQVQ 120
  121 TQKAAKSQTH APLRVIPPFW QLAFFAAAFG TGGYIIDQGD ALNGSGVVSA WSLTYLLFKT 180
  181 IPSIKQLPKN PLAFLLSSSV LSIGLGIHGC HYFDRTSWRG DIPSLTAADA QEVETQGRSS 240
  241 QARLGHSKYD E

Type	Start	End	Confidence
Cytoplasmic	1	135	0.74
Transmembrane Helix	136	156	0.86
Non-Cytoplasmic	157	160	0.80
Transmembrane Helix	161	181	0.68
Cytoplasmic	182	191	0.63
Transmembrane Helix	192	212	0.89
Non-Cytoplasmic	213	251	0.70