YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71017831, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALEQALFLD SAIRDWVLIP ILVVMILVGV LRHNVITLLN SPPKSISAPA LREQRVMARA  60
   61 AALRQNYFQL PPTSFASRKA FLTEALSSGK YLQPRDKEEK EGSKNPFEPA GGMEAMMEPM 120
  121 KKQMVMMIPQ TVIMGWINFF FSGFVLLKLP FPLTVRFKVM LQRDIPTPDL DVTWVSALSW 180
  181 YFLTLFGLNA VYRLVLGDDN AADGTRDMAA MSGAAAPMQA MNPAAPGQAP DFEKLHHAER 240
  241 DNLELVGLED SSVRWIGDGI EDRVLALYS

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.81
Transmembrane Helix	16	36	0.90
Cytoplasmic	37	125	0.89
Transmembrane Helix	126	147	0.87
Non-Cytoplasmic	148	176	0.79
Transmembrane Helix	177	196	0.77
Cytoplasmic	197	269	0.82