YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49072098, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	174	0.96
Transmembrane Helix	175	198	0.84
Non-Cytoplasmic	199	207	0.88
Transmembrane Helix	208	231	0.88
Cytoplasmic	232	241	0.77
Transmembrane Helix	242	261	0.94
Non-Cytoplasmic	262	267	0.90
Transmembrane Helix	268	290	0.92
Cytoplasmic	291	299	0.83
Transmembrane Helix	300	323	0.88
Non-Cytoplasmic	324	333	0.82
Transmembrane Helix	334	360	0.85
Cytoplasmic	361	409	0.95
Transmembrane Helix	410	429	0.93
Non-Cytoplasmic	430	447	0.89
Transmembrane Helix	448	468	0.96
Cytoplasmic	469	488	0.93
Transmembrane Helix	489	509	0.95
Non-Cytoplasmic	510	518	0.84
Transmembrane Helix	519	542	0.87
Cytoplasmic	543	547	0.71
Transmembrane Helix	548	572	0.78
Non-Cytoplasmic	573	582	0.74
Transmembrane Helix	583	605	0.90
Cytoplasmic	606	667	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQHTPPAVD VDNQDQNAPK HKRSLHTPKH GWLHEASKRF MGQTPKGTPT APPQTSSTET  60
   61 NLARPTSAEL DREAETIFRR TARYGGSDPR DPEDRAFEPV SISDDSDSGT CVPSSPTQTK 120
  121 SKNQQSDHNG EDDNRDSEQG RPRGNPDESQ DPNQVEWDGP KDPENPQNWS QRKKWALTVL 180
  181 ASMLTVNVTF ASSAPSAATQ QLTQEFQIGT VTATLITSIF LAGYCLGPIL WSTASELVGR 240
  241 KVVLSIAMLM YTLFILGQAL AKNVETLFVT RFISGVCAAA PLTICGGIIA DMWDPIGRGF 300
  301 AMSLFSCAVF IGPVFGPIIG GFVTQSYLGW RWVFWVMIIF AAVCWLVLII FLPETFAPVL 360
  361 LMRKAKRLRK LDPEANKNLY APHEKSDWSI GGIAHRTLLR PFQILTQEPI LVLITIYLSI 420
  421 VYGILYGLFE AVPIIFEMKR GFNLGESGLI FIAVGLGTTI GGIINVFMSL RYKSLTPFWH 480
  481 NLPPPEERLW GSMIAGPVLV AGAFWFGWTG EYASVPWYVP ALALIPIGIS FTLVFISLLA 540
  541 YIVDCYTVYA ASALAANTIV RSAVGAAFPL FVRSMYLGLG ANWASSLLGF VALVLTPFPY 600
  601 IFYVYGSKIR SWSKFAPAMD LKVRSALEKE GKLPEDSLNT TSAFGRNGLS QAKKEMAAKK 660
  661 DPEKQEQ