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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71008864, gi|...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDGSDIILI LVAIILPPAA VAFITGCSCD LMINILLTIL GYIPGHIHAF WLIYKKMKAE  60
   61 ERFNGAVQYT GNGEWVPKYG QPVHQVPPPS YGATHLVRTL SMTVNEQPRA SKVRGNLKFP 120
  121 GQRAAAQQLR VQYMVIFRKG ADRALSRDPL QAEHEANTVR GNRAARSRAE EQAREHQQEK 180
  181 QKGNQGSYKQ KVFRSWSGTP IKWYPIPILL GAVVLVGVQA RRSYVAEQNG KGVGTKIVDE 240
  241 NGQVVKMQGP WTVYVIGALP LNAISRAWGW ANNLTLPVWF RPFGFKLYAS IFGCNLDEMK 300
  301 DPDLTHYRSL GEFFYRELKE GARPVDDSIL VSPADGKVLH FGEIAGRRVE QVKGITYSLD 360
  361 ALLGVTSSPE ATEKVIGNSQ DDSDHEHLDD RQFASVNGID YSLDELLGDE KSKSALPDQN 420
  421 ETPKRKAFWK KFVKASYWKS WIKRSPAQGS NTTGIPAAGD ESGSDESYDE AHDDNDEDDV 480
  481 QRKDEAALIK KPTQIDDAGM PEPDTPEVLG RYANVAYEMG VGALPPLLQP HSHGQKGVKE 540
  541 GNKLFFCVIY LAPGDYHRFH SPTNWVAERR RHFRGELYSV SPYMARRLSN LFVLNERVAL 600
  601 LGRWRHGFFG MVPVGATNVG SIRINFDKAL RTNVRMQRYL AGTYSEASYS GASKLLGGQP 660
  661 LAAGDEMGGF LLGSTIVLVF EAPNEFRFDL KPDQKVKVGQ RLGDVRQPST EESEEKKNGR 720
  721 QV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle