YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49077992, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTIYQATC SAPVNIAVIK YWGKKDTTLI LPTNDSLSVT LDQDHLRSVT TARADASFGS  60
   61 QDRLWLNGEE EAIKADGRLR RCIDEMRKLR QAKESKDSNL AKLSEWAVHV CSENNFPTAA 120
  121 GLASSASGFA ALIASLAALY ELQPEVSSSE LSRIARQGSG SACRSLFGGY VAWQGGEHPS 180
  181 GQDSLAVQVA PQSHWPDLQA LICVVSDAKK GTPSTAGMQR TVQTSPLLQH RIKEVVPQRM 240
  241 IKISEAIQKQ DFNTFAEITM ADSNNFHACC LDTAPPIFYM NDVSRAIVQL VEELNRANEA 300
  301 DGKGKLVAYT YDAGPNAVLY APKDNMPRIL QTIRHYFPNA DFDDTFDLLG KGVNASHRGA 360
  361 QEARGLPESL PSSFHANVIP VHEAGAVRRL IHTQVGDGPR VLERGVGKES LLNENGEPIR 420
  421 LQRAKRA

Type	Start	End	Confidence
Cytoplasmic	1	118	0.51
Transmembrane Helix	119	140	0.49
Non-Cytoplasmic	141	427	0.99