YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46097472, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKIAANAP LVAVDVFGQH VVQELKTFRS RIPAKSGTAP LFVAMQGPQG SGKTTVTRSL  60
   61 VQHLESIGLT VGVLSTDDLY HTHENLRRVA EESAANPLLS GRGQPGTHDI ELGTQILDQV 120
  121 YNINTPRAST QNAVVQLPVF DKSLFNGEGD RAPCSDTAPT VAPPLDVFIL EGWSMGFSPM 180
  181 SAAEVESKQA ASSPDSPLRR YTLDALQQIN RNLGAYTAWY THFNVFLQIR PTDLENVYIW 240
  241 RTQQEHAMKA RNGGFGMSDD GVKAFVERYM PGYHLFLDTI QQNEQWKGKG KTITIDIDRT 300
  301 IVEVHDW

Type	Start	End	Confidence
Signal Peptide	1	18	0.52
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	307	0.99