YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46097418, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	165	0.99
Transmembrane Helix	166	186	0.88
Non-Cytoplasmic	187	201	0.84
Transmembrane Helix	202	222	0.91
Cytoplasmic	223	231	0.84
Transmembrane Helix	232	252	0.90
Non-Cytoplasmic	253	280	0.90
Transmembrane Helix	281	303	0.84
Cytoplasmic	304	344	0.95
Transmembrane Helix	345	367	0.91
Non-Cytoplasmic	368	373	0.70
Transmembrane Helix	374	393	0.92
Cytoplasmic	394	405	0.89
Transmembrane Helix	406	427	0.92
Non-Cytoplasmic	428	447	0.84
Transmembrane Helix	448	468	0.86
Cytoplasmic	469	480	0.81
Transmembrane Helix	481	502	0.92
Non-Cytoplasmic	503	514	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAQAARPSR QSDAAASQIQ RSRAATPSLT HKASTVSTTD TFASATDGQG YYTDAADVSA  60
   61 YHDDVRSRFD SVPNTINGYG LDQRDGEARL PRSSCSRTDE QGDVMITNVH EPQITSPQLQ 120
  121 ANPQQPPIEA VASPSICSNR NACAEEAGKP TGCEQQSCVP DAYHRLARHA AIVGLLMFSA 180
  181 IWGTLAREGM VALNTYDGES VAPLIWAQAV GCLIMGVAIG ANREPIERTY PPAYIMITTG 240
  241 LCGSITTFSK WMLDVFRAFG DQRHFDRGGL HNVMDALSQT AVTLGMALIS VEAGVALSSV 300
  301 VNVEKLVAAF HHWRSRPGLH PSRTPRADLT DGESKTHMVQ ARPTLILDTC MFLLGLIFWI 360
  361 GCALLCALYG GFRHVTFSLV LAPAGTVARW YLSRLNTHAL SRRFSLPLGT LAANLLATAL 420
  421 ICAAFTASRA GSMPTSFAGR LTGCQALQGL QDGFCGCLST VSTFAVELRT IKPRRNALRY 480
  481 ALLSWLAGLL LCVLLLGAPW WSVGMDGRCL GYPM