YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46097254, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSNYIPDG LLPRWLLVVA ATAAINGASN IVNPRASAKV YSSPNAQITP LSARLFGIWN  60
   61 FTSAVIRFYA AYNINDKIAY ELCMWSFAIA LAHFISETFI YKTAKLGPGI VSPLIVASSS 120
  121 LTAMYLQYGA YITPLPKWI

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.60
Transmembrane Helix	11	32	0.83
Cytoplasmic	33	50	0.59
Transmembrane Helix	51	71	0.85
Non-Cytoplasmic	72	77	0.60
Transmembrane Helix	78	101	0.81
Cytoplasmic	102	108	0.53
Transmembrane Helix	109	129	0.89
Non-Cytoplasmic	130	139	0.59