YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71005864, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGHLGGGRD LRLDKKKLTV RGCFLSAFLN QSTHHHIFDS DVSRGNSAHA STSQLPPDTD  60
   61 MTDVEMSSLT PPSHKVSNLR SSVLDQNDEL ADDSMNGADN LAHSSFSKAP PSKHVRRKRS 120
  121 VLSRKGKRLA HLQSRDLVPA SRLLHSAHGD NDDDSDDGSS FDTENEYEDE EGDDIGGIQR 180
  181 KGTPSRIRSI TKYAFNYILP NAVSPLPHQP IESYASTGNH MDKPELLLGY AQLIFNASIL 240
  241 SAFLYLLFHV VRTVQKDVAE KVRSYEMDIL SEITTCAAAY TANRCGTDLQ APALASACKN 300
  301 WERCSARDPA VVGTARVTAE TFAEILNGFV DSVSWKTMFF TLICLSIVVG ATNSFLSFFR 360
  361 IKSRSQNHDS NPTSQNLPQS TAGHPSAPPP SHAIAAPTHS SLANGVPAFY HPHQHPGYES 420
  421 APHYAYPTWQ QLAPSTPSRR RTRQGA

Type	Start	End	Confidence
Cytoplasmic	1	225	0.64
Transmembrane Helix	226	248	0.74
Non-Cytoplasmic	249	336	0.63
Transmembrane Helix	337	359	0.87
Cytoplasmic	360	446	0.66