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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71006102, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPAKCDVIP KEQFTPFAER RACSGCRKIK SRCIFPDDSI NCTRCIRLSI DCVVPSHHRG  60
   61 VKLEAQLPKS SSSTTPLKRT SSKSHLRDSA SPAPNGELDG SSSTSVNPFS VQSLLDTTSS 120
  121 ESTASKALLS STFHSHIQEE PAVKLATAAA RRPLIESVIT AGLFDEDEVA ELVRFYYEHL 180
  181 NPIIALLDCQ IYTLKALKTN PDYRILLAAI CTVSSKFVKV ERYLDALELL KPALSRIAAD 240
  241 DIPPQLEIIQ SLSILAMWKH PKDGSSWRKV RLAITQAFEL GLHELFGPQK RSKAGLSRSF 300
  301 IQSQRTLMQL SCFEDGYRDQ RHLPPAIDPS LLPDPREWID SLGDMVQDID VRLAASRENA 360
  361 NIKRDLITSL KQSNARSPNP TQISRATCLR NARLIKMGIT AQTCSSSVWM NPPASEIPCQ 420
  421 HSGRPCLIFH DTNTLFNYHR ALYSIYSSPL LSGPAFAQDR QAAFRKCSEL SVQLFELLNG 480
  481 VYGQAGYYRY VHDIVILNLA VAAVWICDNW RAMPHELAMH ACLAIRQAAD ATSPSLENHL 540
  541 EQGSYLARFL RFCCKKLPST ISINENSPIN AEDLVISEDA KWAMGLNPFS QVSNTVFGAA 600
  601 PSSFGPPFRS PHMQGASPNG ADWGGLPRSK YGGLHSSSNG NGNGNSNSNG SQHGICHSTS 660
  661 SQTFGSPSLL SASSPQGRFG DGGANGGDAS SIFSNGHAQS HSHGGQGHAQ LRRLSHHQTA 720
  721 AMNNQTLQYL SESLVPPAYP MHWDTLRRVS DVRSDELASL GLATSVAQQR RDIMTTMPGP 780
  781 SASGAPKPRK PKRTHQVRQD QRRWIELIDA WHSSNSSMSF ATPSREQLVE EISQHAQTLC 840
  841 RTIKNREWLL AAFHMAINAV LFPECNDGLQ NNEQVSHVEQ LGQQLLQLAL HSVATPYLNS 900
  901 LENERHRDTS QIETVRQDAE QFERLSKRLS LYRHVRGLEP MLSLPALPLA LVLREAPSTV 960
  961 LLCLASLAQG ADIVSPLLKS YSWLVDESAH VRLALVAQLL TAGTGYMQTY RLLAASGLLL1020
 1021 AWKDGHESSI WQSAHPAHQL TLGDLVEFYS DILQGLRQIG STAQANALVS VLANEMHGQD1080
 1081 AQQAIAQLDH TASAGTRPDQ SYADPDIFSA IMQRFHLSSI HDMAIKVSAV STDSAARKQL1140
 1141 ARELVSTHDA ATVASRLTQL VDTKDSALIR AFSFDVVSQT SASGNARTVP LIASVLYARP1200
 1201 AVGNFSLNLD TPAALLKQAE ACLSQLKHAR VSSQAEISGS RLGDTLRRSL DLEQQCVVPA1260
 1261 CQLLALLDGA SQEPTLVDAQ LHLSWLASIA SVVQAQTSKP ALDMCWLAAY GGSHSGSVKV1320
 1321 AAQRQREALD AIVSSFNAAH PAPASLGGRA DRSLDAAMLR FRAAWDGMFH SCLDLIGASA1380
 1381 PFSLISKQEA VHRLLSTVMR TGDVELFRSL ADSSCTLSAS QLEELVLDVS ISLFDQAAIA1440
 1441 SMRSKDVRVS LEILSALPAT CARAVSQKHF IEAACRLSTF HIKSVLHPGE PMSAREMRET1500
 1501 HDKLSLVGRL LTTQGDAHRS AELVLDLAKR VCALDMQSTR QQELVEVRTL AMLCEAASAA1560
 1561 DDFECAAEFC SRLLHTCCAS TRKPRRADES DEIDEIGWKT AFQLSKHSAW QDTPARIAML1620
 1621 AHAMTVCPAT QLNRMLHQWC ALDGQLRDEL ANGKVFASTS TTAGAGAIGW LSAGAGVGGK1680
 1681 RMLSAHTAAS VGAGLVGTAA NYLPLSLGSY FSTDRSTSNN PVSKTSASAP EKHDSRLDHR1740
 1741 TASLFDFDNV SGASGARSAS AYVDPAERAV RAARAARDFL GWKSDQQSHA QTAQTGQAAA1800
 1801 KSAFSFSRGV GWLIGDTSVA EIDMGAGVHW ASSWSTNHRL ASLWDWLHVR FVDGLQLGLH1860
 1861 GHELMLQLGI AAQTRLCGEM LDDLTDRIRL VDQVSDEFRD GRIQFDGGHR LSFTEHHVRS1920
 1921 GGHETTLSMQ TADVPDSTID GVVRAASDFR GLAGSRIDVG RCQKRRRTVQ ASVASCDVSG1980
 1981 SKPEQTVSGA GVDHKQDSDS FVAHRSQAGY DAMTDPTATS SPASSIDTHH ARTTSSKVAA2040
 2041 GAESSGKRGK QAQLSPHAPS WLEWLSDKYT IQYVIPAAYA PAALQVVNTA FPLGIIFGLV2100
 2101 LPRTLCFLRD TLTGASLASS WTETPWWAWP QLHIYLFSWV IFHVLEFSVT ASYNPTRLFS2160
 2161 DSFLLNNGIH YHVAHVVSLL EFSLTAHLYP AWKVPSLFTL AGIVLIVFGQ TMRSLAMIHA2220
 2221 HNNFSHILAF QKRTDHELVT TGVYAWTRHP SYVGFSYWAV GTQLMLGNKL TMIGFVATLW2280
 2281 LFFSRRIKAE EKSLVEFFGQ EYEVYRSKVG TGLPLIW

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