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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46097076, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNDQQQDA QSSKRGSVLL PPSPRPITRR IISDRDHPHS TQSLPSTGTM RPNLWNAVRQ  60
   61 RVRVTSALKK PGDSSQRRSR AFEDERRFDD EGITSDTLRS DIDHLLAPGQ YAEQWQSLAH 120
  121 LFDAAEGNGS GPSLSRLRQS RRTKRLSLAH QSRNVSSSPS LADVEPSSAE RSALFRRPAS 180
  181 YVQPSDPENP DDSLASFAGS SSLKGSSSFK LRPRTSSSIR EPLVQNRAKR AASALPSMVD 240
  241 SQAPTHSSLH DLFAPRASLS DEPTSLLTND PDQTPLGEDP LLYSMQHRLL DSDTDSETET 300
  301 DSDIDIDIDS GSGSEGEGDQ VQARASSIKP VPDLSYSGIN GQYTGHTLAS VQSSAGSAGR 360
  361 IGPFRGVIRS VRSVLGGHNL TPLQRSIFKC SLAYLFASLF TYSATLSRWL ASFLPNNDPD 420
  421 GDVPFSNLHM IATVAVYFHP AKTLGAMIEA DLFALGAFVY AITLGFCSMA VAVFLHETDR 480
  481 IVISDIVSVL FFLGIGIALV GYAKIKVAKP QFNTACSLIS IIVFTVVVKE GSLHLGHFST 540
  541 EKTFQVTLVV LMGSLISNVV CFCVWPQSAT SNLQGDIVRN LRGFSTLLRV LTKTFLLEDP 600
  601 SNFHFKSDRI KRAIDDHHDS FTSLKKNLEE AKLESLFDLR MRGMSAKYVV ATDSLNRLAQ 660
  661 HLAGLRSSCG LQHQIMAARR EAVRATREAA PDSSRAEHQE STSQDSTTAR PTKSRPASTR 720
  721 LAHMFESEPA LEPSSQNGKA NAFEDFIASV GPHMRSLVFS CCRTLRGLRS TFVARDSTVV 780
  781 SELKPPCTDQ NGGSTGTWYN SGATSTGAYV PGSSFDGLHN DISKALRRFQ HEQTVAIKRI 840
  841 YTMEPKKMAQ KLDGDEIVQS TEDGEGAVSS LMQDKQGDED VFLIFFFVFN LEEFAKELEV 900
  901 LVEALEEIRQ AEERIALARQ TSTWMRVRLF GGTLGTMVSE YASMLGWRWG TGSRSAKRDR 960
  961 GYSKASKASR AAKRMTTPLD FPSNRRHAVD THQTPKAMTW KDKLQRLVWQ VGEFFRQPDT1020
 1021 KFAIKAGLGS ALLASPAFFP STRPMFTKFQ GQWALVSFMV VLSPTVGQSN HMSLHRIMGT1080
 1081 IMGACAAVSI YKLFPDNHIA LPIFGMLFSI PCFRYIVGKP QLASSGRFVL LTYNLTALYS1140
 1141 YNLRKTGIEV EQIAYQRTVS VIVGVLWATI LNQLVWPFEA RRQLALGVSD VLFKLAWLYQ1200
 1201 RLVLSYSRDP SQVGSQRLDA GEAYDDEDGD EQDNDSDDQD DEEAALLSTF ASGHGDEFQA1260
 1261 IELHLQVSLI KLEGLLAQTK NEPRLKGPFP VATYRSMLSC CQNILDKLHS MRCVTARQDW1320
 1321 YRHVRRDFVI PVNAERREMV GNVLLYFYTL GSAFHLKSPV PPYFPPAGQC RARLLDRIRE1380
 1381 LPVVKRRAVR GSSAYLLFYS YALAMKDVID QLDSLGRLTQ QNFGVWGGSV DDFERHFMVS1440
 1441 ANSAAPSPLA SRKPSTTKLQ SSRCR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle