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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46097011, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAFANATTA TSGLAKLNQT PFYFQPQPSV VPGISDKYLS LALPIIIYWV ASLFYHALDT  60
   61 LQLPFTEKYR LHESEEVTKR NRVGVTRVIV MVVVQQIIQT VFGVLLLDDD SVGLEQTFAD 120
  121 HPAKILDIAA FLRSTTTKLL GVSLEPATTK LLFASQDALS AAWWLYWWGI PTAQLWFAFF 180
  181 VMDAWQYTLH RLFHESRFLY RHFHSHHHRL YVPYAFGALY NHPVEGLLLD SAGAAISHAA 240
  241 ALMTVRQGIL LFTFSTLKTV ADHGGYAFPW YLDPLHILFP NCAEYHDVHH QMTGLRYNYS 300
  301 QPFFVHFDVL FGTRISADKF QKMKKLAEQK RAAEKSSAAA VDAKVNGSST PLPQLSGKDV 360
  361 TPAEIVNNTK DPFVTSSKRS YVAKAVVLLL NSTVYPAWLL HHTSQSAAVR VRADAGSVGL 420
  421 HLVVARQFVF VIVVFATRWL LRGLNLDGLN LGAGCKTEQQ LRVSRQEIRA WCLDHSGFLS 480
  481 ILSSLPPTSS QSLPVCQGLV TKEPSLDMSD STAVASSAVE FEAKVQIVDE LPRAPTLSSE 540
  541 LRQSNADDSD SDDNNDANAA DQVEDPQTED EAGPSSAADD PEPANNGITR GIVQYGSVRV 600
  601 DHSGGPHNSV DTQADDIPDD SELLAQYPDT EEVLDLGHLR LTTTKRLGLQ RFAPSLKRLC 660
  661 LRQNLLTKIR SKDIGILTEL QDLDLYDNSI EKISGLDELT KLESLDLSFN NIHHISNISH 720
  721 LGQCKTIYFV QNKISRVRPD DFQGPIASSL QSLELGGNRL RTIENFAHLT NLTQLWLGKN 780
  781 KITSLQGLET LTNLRVLSIQ SNRITKLEGL EKLVNLQELY ISHNGLTKLE GLQHNVKLTT 840
  841 LDVGANMIEK VENVGHLSLL QEFWANDNKI TDLNGLDKEL GETKMPALET VYLEGNPGMR 900
  901 KEGAAFTIHD SRFTIYDLRL NGSLATSSRH LAHSPYRSIL SLRCIDHLKL EQIAPDCAQS 960
  961 ATRCTHVFTL RIRIQNRQGL ERIKPHLHRW KKRETMQQQY LCLACSSTIP ANVKPASVTC1020
 1021 LTSNPRLVTF CPICEDATAA FRKGPRNDVT RKGDVLFDVQ ALLDREQAKE QERIPPPPYS1080
 1081 ESKGEEDVSG KFVVEEDTES EQEKVKPTGK QPSLLTRQAS KSCAGAEVDV SAHPADALTA1140
 1141 DDSESSSKLI SHRRKVDPHN TTGASSCTSS STARDNGATR QYYLGKTDTL QSIAIRFCIS1200
 1201 SNELCLLNSL PRAVLSTSPH LLHTRSFILL PSHAVEKQLA TNPGLEQSLQ GPPRKSANEK1260
 1261 TIAARRTAEA KFRATLAKRA GETPADERAA KAYVGLAEDE MRWVDFGEGL DELGLSVGCE1320
 1321 ANARTGRDDN EMWEAQQDTA RRCRFDAILK HALGKWEMDS DWERAQRAQG LDPSIISNPP1380
 1381 TASASSGFES ESNSKTSHYW FTRALHSHQP GESSSSPRRN PRHVVSLSSS VKLPTLLKKS1440
 1441 FEGAHKAPIN VARYSSTGRY LLTGSTDRTV KLWNVGSPAH DSQPISTYTE HNYAVHALDV1500
 1501 CADNSRFVSA GLDKSLYVWD VSASSVVRRF SGHSGKINDV RFAGNDGDGS VIVAAGWDGV1560
 1561 VRVYDLRAQG SWKPIMELRE ATDAITSLSV SQAKIYSGCV DGVVRTYDVR AGQLKSDTFP1620
 1621 AAVTSIAPSK LETSMLVATL DSTLRLLDTR DGTLLQSYQG HQHQEYRCRA VFGADEEGIV1680
 1681 IGDERGRLVG WDMVSGESVR VGAKEGEEAR RRPVLWVEFH PQDPGEMVSA GADGVVRVWS1740
 1741 TASG

YRC Informatics Platform - Version 3.0
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