YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49070262, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKIGWFGLF YLLPIATFAC WTTAIVGLLV IWAVRDRFRE YESEEASVVF ISDVGAQHKT  60
   61 FFIIFCSCTA GFYILTTLAE RHLRHQRRIP GSIRKKQTIL DICSVICAVI GCVALILLSV 120
  121 FDAFNHSTVH WSMTLIFVVF VALSVLFQVL QVFSLSHDYD RLATLKVIAI IKAIILSLAI 180
  181 AGAIAFIICY GICRGDALPG NDRCDRIISA AAVCEWAIAF LLAIFFLTYL VDLWPAHKRA 240
  241 RLGLSLDGGL VENKQLAKEQ GVDDKPTAPY AIDGVENNNT YYPSQAAQQY HNGNTGNAVY 300
  301 PAPAVAHSVT SQHGVQPSPA GIAAIESSPL NAPSTLPGSE RGSLYQTPMT EARPYPNNDV 360
  361 THSLYTSDPA YNTSYPHPTN APSHNTFR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	31	0.93
Non-Cytoplasmic	32	59	0.89
Transmembrane Helix	60	79	0.95
Cytoplasmic	80	97	0.97
Transmembrane Helix	98	121	0.92
Non-Cytoplasmic	122	128	0.88
Transmembrane Helix	129	152	0.87
Cytoplasmic	153	167	0.89
Transmembrane Helix	168	192	0.87
Non-Cytoplasmic	193	207	0.93
Transmembrane Helix	208	231	0.86
Cytoplasmic	232	388	0.99