YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46096958, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTVPAFRSA SSSLAKRPTL ASSALKLNRM SVRGLAMPVT NAPTSAYNKQ KGSDGKYTVT  60
   61 LIPGDGIGPE VSNAVKEIYH AANVPIKWEE VSVAPFIKDG KQTIPEESIV SIKKNTVALK 120
  121 GPLATPIGKG HVSLNLTLRR TFHLFANVRP CKSIEGFKTA YDNVDTVLIR ENTEGEYSGI 180
  181 EHEVVDGVVQ SIKLITYEAS ERVARYAFHH AEQNGRNKVT AVHKAPIMRM SDGMFLHACR 240
  241 QVAKEYPHIA YDEDLLDRAC LRIVQDPAPY ADRVMVMPNL YGDILSDMCA GLIGGLGLTP 300
  301 SGNIGKDASI FEAVHGSAPD IAGQDKANPT ALLLSSIMML RHMSLFDKAD QIENAIFKTI 360
  361 AAGERTGDLG GKLGTRAFTD KIISRL

Type	Start	End	Confidence
Signal Peptide	1	21	0.68
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	386	0.98