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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49068686, gi|...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIFRRRQQ PNPASLSISD NAEQEVVATS FSTPPSAQTA PQVGRCRTVP PAGSSSGKSN  60
   61 VKTASKRRRS LGNILSPTLF PRTPEEELDP LLTEDYVEPD HIEAFREALA ADLGQQEYQP 120
  121 SSSAHITGST SWNVFGYGNA AKSPTETGQP AEPKSSAMTE PSGTRASNPR KVGRIAAASD 180
  181 FAPINEKIAR KSRNKRRAVD SGTREGFVFH TLRWPFLISI FIVISLEFLL YVLVRQLVNV 240
  241 IEYSLAWRGR KGQLRKRMRS ASNYADWKEA ALAQDDFLGY EKWKTEDGSG FYDWILVKKV 300
  301 KSSLENFREK DDAENLLGVL DLCLRNNFAG TENFRLYSET YFGTKYLVES YLAEIETALE 360
  361 YIEKTDKVSL ETKRSFYRTV SKNLGRSALC LSGGASFGYY HIGVVRALLD ANLLPKVVTG 420
  421 TSAGGLIAAL TCTRTDEELR QMLVPALADR ITACEEPFSV WARRAWATGA RFDTVKWAEK 480
  481 ASFFTMGSMT FKEAYERTGK VLCISVIPAD RHSPVKLLNY VTAPDCVIWS SLLASAAVPG 540
  541 ILNPVCLMQK RKGTEEIVPW NWGHRFKDGS LRVDIPLQDL HALFNVNYPI VSQVNPHVHL 600
  601 FHFGSKGSPG RPTAHRKGKG WRGGFILSAS ERILKLNLSM NFKILRDLDL LPAILGQDWS 660
  661 SVFLQRFGGA VTILPKTRAW DWVRILSDPD RKELARMMSV GKSVTFPKLH MIENRVRLER 720
  721 AIEQGRKTCR KAVRASHEKV DRSPASNTIQ ALPTIDGRSR TSGESVSRRG VGPRSATSLQ 780
  781 SDTDNDDFFT NKEVLGLTKV AGSSRRDGLD DSAVGTPNSV GHSREDVSSP AKGDCMSRPK 840
  841 PYPTYSKYLI GTHNSASRAS GDQPQEEADR AVREWLDRSQ EHNGIADNGQ EAAVDGDDDV 900
  901 QGASQLPSFS VEMQSGGTRG NGVQGKQRMH QASFGSSPIH YRLRTWHGKS RHSWDDRSQD 960
  961 FGDEDEEPID QDDRGIYESS SDEESGPADS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle