YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46096737, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPKASGSLL SGARKSGISL ALNGGSGQAG GVSLHDRLSA RSRVTNLGIL LLLGFAGFSA  60
   61 LLNLRFMLFH RNPPSIPQGY IEFNGRTPEL LSASVPPPRT GTNHLNHLVI VTGHAIWAGC 120
  121 DVKGKDNDEN WVLEEYQKGG SVKTFYKHIE KGMQLTVEDP NALLVFSGGQ TRPNSLQTEA 180
  181 ESYYSLAMSA NLEVPMIAGS LVNLTLPSSS SSSSPSSSSS SASSFIGSLA HANAAVATRK 240
  241 GLQDARMTTE NYALDSFENL LFSIARFREY TGHYPGRITV VGYAFKKARF EDLHAKAVRW 300
  301 NTRGFLHNGE RTFQYVGIDD EGLTDSENIA QRRGEKLKAY NLYDKDMYGC HGRLKEKRIE 360
  361 RNPTRRFHPY MSSAPEIADL LNWCPAPNSG LQGLYPENLP WDARVTGTGW GRGALAVKAN 420
  421 SKGNIIPDTR WLQIGREP

Type	Start	End	Confidence
Cytoplasmic	1	46	0.82
Transmembrane Helix	47	68	0.90
Non-Cytoplasmic	69	438	0.92