YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46096585, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTKKNKPG AAERAAKAAA TAIESAATPV ADAAPAAATA AKPATTASEA QATTSSKRGK  60
   61 LIRPRGKRGG IKNRKGGASA KSAQVQQSAV KDARKAKGNA AADSKDFTDS NAAPVPPAEH 120
  121 AEKIAKFHTL LKQLEQAKTA ADKDEIQAGL DSLGGLAQYQ AWSLTGSAKA GQTPTSKWCM 180
  181 EALATVYKHD RDLPKFRVLD VGAITGTAYE KYRWVDATYI DLHPQGDNVQ KYSFFEFPVP 240
  241 TDTKQRFNMV ALSLVINFVG DVRKRGEMLR HVHKYLPDNQ DTPGFCFLVL PLSCLTNSRY 300
  301 MNQSHLRAIL SSLGFNVVKQ SDSNKLSRWL LQRKPLKERQ EAAANNGNAA AASDEWDGTV 360
  361 FKKRDINPGK DRNNFAIVVD PKPEQ

Type	Start	End	Confidence
Signal Peptide	1	33	0.91
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	385	0.99