YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49069072, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSQIVLAS LSVLGVAGIG YAVYFDHRRR NDPVFRKSLR KESKKTSKAD KKQAARRAQQ  60
   61 EEGFIQELLQ EVRTPGVFPS GVEEREQYFL KYVSLGEQLF AMGSDKYLDA AAAFFRALKV 120
  121 YPQPVELIMI YQKAVPKEVF DTIMRIVSKD IATGGGNEGA EGMSAATLDE VDDDGPSPAA 180
  181 PTEAEADKED KNNKNDTNDT NDEDDKEVST SASTTTSSPA KAAAVPATDS GTTSSQEWDT 240
  241 LSATSLNETG LMATPAAPAS TSEQSETSSK PEEPQLTSVD TSAAAEAAGP ATSSPSKQNI 300
  301 SSGWSPAPVF GGATSPRTDK KASLESESEK SA

Type	Start	End	Confidence
Signal Peptide	1	22	0.94
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	332	0.99