YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71004420, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSSASSTA APAASNTTGY ELPWVEKYRP LRLDDVVGNK DTIDRLKVIQ KDGNCPHLLI  60
   61 SGLPGIGKTT SVLCLARALL GEAYKEGVLE LNASDERGVD VVRNKIKTFA QKKVSLPPGR 120
  121 HKIIILDEAD SMTPAAQQAL RRTMEIYSNT TRFCFACNQS NKIIEPIQSR CAILRYAKVR 180
  181 DEHILKRLLE ICEMENVEYS DEGLAAIIFT TEGDMRQAIN NLQSTWTGLG FVSPDNVFKV 240
  241 CDQPHPFLIR SILLACKDGH VDEALEKLDE ISSKGYAAVD IVTTLFRVVK TLDAIPEATK 300
  301 LDFIKEIGWT HIKILEGVAT LVQLGGLLAR LCKLSMHPNQ FQV

Type	Start	End	Confidence
Signal Peptide	1	15	0.55
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	343	0.98