YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCB5R_USTMA
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.16
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLIEQVVLV ASILITFGTC LAATKYAARL FPHFEPLQFY DEATNPMELN IVLAFVVGLI  60
   61 GSVVVLLYFD SQKIKPVLNP TQWQQYRLME KQKLSDNTAL YRFKLPRSNN ILGLPIGQHI 120
  121 SVQANMGGKT VVRSYTPTSS DDDHGFFDLV VKSYEQGNVS KYIGSMKIGD LLSVKGPKGQ 180
  181 MRYAPGLSRH IGMIAGGTGL TPCLQIIRAA LKNPADKTQI DFIYANVKET DILLKDELDE 240
  241 LALKHKDQFR ISYFLNEAPE GWKGGVGFVT KEALEKNLPK PANDIKVLMC GPPPMIKAMT 300
  301 GHLEALGYEK PRTVSKLEDQ VFCF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.51
Transmembrane Helix	7	28	0.61
Non-Cytoplasmic	29	48	0.82
Transmembrane Helix	49	69	0.67
Cytoplasmic	70	189	0.55
Transmembrane Helix	190	204	0.16
Non-Cytoplasmic	205	324	0.58