YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30025466
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIVGKIWLTI LFIFRMLVLG VAAEDVWDDE QSSFACNTQQ PGCSNICYDD AFPISLIRFW  60
   61 VLQIIFVSSP SLVYMGHALY RLRDFEKQRQ KKKLYLKAQM ENPDLDLEEQ QRVERELRRL 120
  121 EEQKRIHKVP LKGCLLRTYV LHILTRSVLE VGFMIGQYIL YGFQMHPIYK CTQAPCPNAV 180
  181 DCFVSRPTEK TIFMLFMHSI AAISLLLNIL EIFHLGIRKI MRALDGKSSS GNTENETGPP 240
  241 FHSTNYSGAQ QCMVCSSLPE RVSLLQANNK QQVIRVNIPR SKSVWQIPHP RQLEVDVSCG 300
  301 KRGWAERVEN SEQLHVHSPC PHERSARIQH PGQQPCHSIV CPKNVMSQSW LGTMTASQHR 360
  361 PSSVLETWER SQGPEVSGKP LTDRQSHFQG SDGSARESGV WTDRLGPGSR KASFLSRLIS 420
  421 EKGQ

Type	Start	End	Confidence
Cytoplasmic	1	6	0.81
Transmembrane Helix	7	24	0.87
Non-Cytoplasmic	25	58	0.92
Transmembrane Helix	59	80	0.90
Cytoplasmic	81	137	0.95
Transmembrane Helix	138	159	0.79
Non-Cytoplasmic	160	193	0.87
Transmembrane Helix	194	217	0.86
Cytoplasmic	218	424	0.92