YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50776426
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WESSAQLCVL QVRDLWGRSC GATAPCCQKL CVLATPQRKR GKRQEAWLPV STACVTAVRP  60
   61 VFQGSLGRTQ PLPHYTPRSP STWRRPCNSA SVQHGGTQPG APLFLPGSGA PLFQPRPGIS 120
  121 ASSSGSGGAR YGGGLLRAAS AYRRPSAAIR GPASSEGGPG GSAYGCGEKP GRRRPHSGGR 180
  181 RNGAALGLCG LAAGVLLWVG SRHRAGVLLS GSDVPVLLPA SRRAGPGTGT GLGRERAPGW 240
  241 VRSGTAAARL TYRRRLSYNT ASNKTRLSRT PGNRIVYLYT KKVGKAPKSA CGVCPGRLRG 300
  301 VRAVRPKVLK RLSKTKKHVS RAYGGSMCAK CNPMTFLIEE QKIVVNLLKA QAQSQKSK

Type	Start	End	Confidence
Cytoplasmic	1	181	0.77
Transmembrane Helix	182	200	0.89
Non-Cytoplasmic	201	358	0.89